Tableau information
Concept source: d3wsda_ amino acid (a.a.) range (GLY112)(LYS165)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HEEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY112) (ASN122) H1
(ASN125) (TYR130) E2
(LEU134) (ILE139) E3
(PHE144) (ILE155) H4
(ILE160) (LYS165) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 146.7° E2
E3 -13.4° 145.3° E3
H4 128.8° -66.1° 141.2° H4
E5 -58.5° 110.9° -45.5° 171.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3upsa_ : (ASP15) (GLY84) [view usage] : d.218.1.0 |Nucleotidyltransferase |Nucleotidyltransferase |automated matches |automated matches |Zymomonas mobilis [TaxId: 264203]
d2rd5a_ : (GLY77) (SER135) [view usage] : c.73.1.0 |Carbamate kinase-like |Carbamate kinase-like |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1oj4a2 : (ARG220) (VAL269) [view usage] : d.58.26.5 |Ferredoxin-like |GHMP Kinase, C-terminal domain |4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE |4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE |Escherichia coli [TaxId: 562]
d1qhma_ : (GLY1528) (VAL1603) [view usage] : c.7.1.1 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |PFL-like |Pyruvate formate-lyase, PFL |Escherichia coli [TaxId: 562]
d2ww4b2 : (ARG220) (VAL269) [view usage] : d.58.26.5 |Ferredoxin-like |GHMP Kinase, C-terminal domain |4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE |4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE |Escherichia coli [TaxId: 562]
d1nyqa3 : (SER66) (SER142) [view usage] : d.67.1.1 |RRF/tRNA synthetase additional domain-like |ThrRS/AlaRS common domain |Threonyl-tRNA synthetase (ThrRS), second 'additional' domain |Threonyl-tRNA synthetase (ThrRS), second 'additional' domain |Staphylococcus aureus [TaxId: 1280]
d3wsea_ : (GLY112) (LYS165) [view usage] : c.135.1.0 |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d1yfja1 : (PRO100) (SER154) [view usage] : c.66.1.28 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |N6 adenine-specific DNA methylase, DAM |DNA methylase T4DAM |Bacteriophage T4 [TaxId: 10665]
d2ww4a2 : (ARG220) (ASN274) [view usage] : d.58.26.5 |Ferredoxin-like |GHMP Kinase, C-terminal domain |4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE |4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE |Escherichia coli [TaxId: 562]
d1o2fb_ : (GLU314) (GLY366) [view usage] : d.95.1.1 |Homing endonuclease-like |Glucose permease domain IIB |Glucose permease domain IIB |Glucose permease domain IIB |Escherichia coli [TaxId: 562]
d1uuta_ : (GLN50) (VAL136) [view usage] : d.89.1.3 |Origin of replication-binding domain, RBD-like |Origin of replication-binding domain, RBD-like |Replication protein Rep, nuclease domain |Replication protein Rep, nuclease domain |Adeno-associated virus, aav-5 [TaxId: 272636]
d2yyba_ : (ASN109) (GLY158) [view usage] : c.135.1.0 |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1vs5f1 : (TYR25) (ARG91) [view usage] : d.58.14.1 |Ferredoxin-like |Ribosomal protein S6 |Ribosomal protein S6 |Ribosomal protein S6 |Escherichia coli [TaxId: 562]
d2fywc_ : (ASN110) (VAL164) [view usage] : c.135.1.1 |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |Hypothetical protein SP1609 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d3g7ea_ : (GLY33) (ASP105) [view usage] : d.122.1.2 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |DNA gyrase/MutL, N-terminal domain |automated matches |Escherichia coli [TaxId: 562]
d3qn3a2 : (SER173) (ALA241) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Campylobacter jejuni [TaxId: 197]
d1np6b_ : (TYR58) (GLY109) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Molybdopterin-guanine dinucleotide biosynthesis protein MobB |Escherichia coli [TaxId: 562]
d3egna_ : (GLU449) (PHE500) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3szya_ : (GLN269) (GLY330) [view usage] : c.76.1.0 |Alkaline phosphatase-like |Alkaline phosphatase-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d4iwma_ : (GLY112) (LYS165) [view usage] : c.135.1.0 |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d3t02a_ : (GLN269) (GLY330) [view usage] : c.76.1.0 |Alkaline phosphatase-like |Alkaline phosphatase-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d3zlga2 : (PHE175) (ALA245) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Streptococcus pyogenes [TaxId: 286636]
d1qf6a3 : (GLU66) (LYS138) [view usage] : d.67.1.1 |RRF/tRNA synthetase additional domain-like |ThrRS/AlaRS common domain |Threonyl-tRNA synthetase (ThrRS), second 'additional' domain |Threonyl-tRNA synthetase (ThrRS), second 'additional' domain |Escherichia coli [TaxId: 562]
d2j3wf_ : (ASN92) (VAL162) [view usage] : d.278.1.2 |Ligand-binding domain in the NO signalling and Golgi transport |Ligand-binding domain in the NO signalling and Golgi transport |TRAPP components |TRAPPC5, similar to trafficking protein particle complex 5 |Zebrafish (Danio rerio) [TaxId: 7955]
d1m55a_ : (GLN50) (VAL136) [view usage] : d.89.1.3 |Origin of replication-binding domain, RBD-like |Origin of replication-binding domain, RBD-like |Replication protein Rep, nuclease domain |Replication protein Rep, nuclease domain |Adeno-associated virus, aav-5 [TaxId: 272636]
d1mzoa_ : (GLY528) (VAL603) [view usage] : c.7.1.1 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |PFL-like |Pyruvate formate-lyase, PFL |Escherichia coli [TaxId: 562]
d2fywa1 : (GLY108) (VAL164) [view usage] : c.135.1.1 |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |Hypothetical protein SP1609 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d3zlha2 : (THR174) (ALA245) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Streptococcus pyogenes [TaxId: 286636]
d2fywb_ : (LEU109) (VAL164) [view usage] : c.135.1.1 |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |Hypothetical protein SP1609 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.76, d.58, c.66, c.135, d.122, c.37, c.7, c.73, d.278, d.67, d.95, d.89, d.218