Tableau information
Concept source: d3so4c1 amino acid (a.a.) range (PRO17)(SER95)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HEEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO17) (ASP36) H1
(LYS38) (LYS48) E2
(GLY50) (THR60) E3
(ILE66) (GLY78) H4
(CYS91) (SER95) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 155.1° E2
E3 -34.2° 165.7° E3
H4 130.7° -57.5° 129.4° H4
E5 -51.2° 140.5° -25.8° 143.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3so4c1 : (PRO17) (SER95) [view usage] : d.130.1.0 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |automated matches |automated matches |Entamoeba (Entamoeba histolytica) [TaxId: 5759]
d1lwsa3 : (ILE312) (PRO367) [view usage] : d.95.2.2 |Homing endonuclease-like |Homing endonucleases |Intein endonuclease |VMA1-derived endonuclease (VDE) PI-SceI |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3k5ma2 : (ASP512) (CYS599) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |automated matches |Escherichia coli [TaxId: 562]
d4jj9b_ : (MSE18) (VAL128) [view usage] : d.80.1.0 |Tautomerase/MIF |Tautomerase/MIF |automated matches |automated matches |Bordetella bronchiseptica [TaxId: 257310]
d1ivza_ : (SER55) (SER127) [view usage] : d.58.41.1 |Ferredoxin-like |SEA domain |SEA domain |SEA domain from the hypothetical protein homologous to mucin 16 |Mouse (Mus musculus) [TaxId: 10090]
d1xraa1 : (PRO15) (SER99) [view usage] : d.130.1.1 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |Escherichia coli [TaxId: 562]
d1y69k1 : (GLN47) (ARG135) [view usage] : d.41.4.2 |alpha/beta-Hammerhead |Ribosomal protein L16p/L10e |Ribosomal protein L16p |Ribosomal protein L16p |Deinococcus radiodurans [TaxId: 1299]
d1jrob1 : (LEU52) (ALA121) [view usage] : d.41.1.1 |alpha/beta-Hammerhead |CO dehydrogenase molybdoprotein N-domain-like |CO dehydrogenase molybdoprotein N-domain-like |Xanthine dehydrogenase chain B, N-terminal domain |Rhodobacter capsulatus [TaxId: 1061]
d4lkbe_ : (ILE16) (GLU105) [view usage] : d.80.1.0 |Tautomerase/MIF |Tautomerase/MIF |automated matches |automated matches |Nostoc sp. [TaxId: 103690]
d3so4a1 : (PRO17) (SER95) [view usage] : d.130.1.0 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |automated matches |automated matches |Entamoeba (Entamoeba histolytica) [TaxId: 5759]
d3rv2a2 : (ILE154) (ASN246) [view usage] : d.130.1.0 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |automated matches |automated matches |Mycobacterium marinum [TaxId: 216594]
d4k8za2 : (CYS506) (GLY581) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |automated matches |Thermococcus kodakarensis [TaxId: 69014]
d1g61a_ : (THR2149) (GLY2187) [view usage] : d.126.1.1 |Pentein, beta/alpha-propeller |Pentein |Ribosome anti-association factor eIF6 (aIF6) |Ribosome anti-association factor eIF6 (aIF6) |Methanococcus jannaschii [TaxId: 2190]
d4lkbb_ : (LYS17) (PRO107) [view usage] : d.80.1.0 |Tautomerase/MIF |Tautomerase/MIF |automated matches |automated matches |Nostoc sp. [TaxId: 103690]
d3byra_ : (PRO9) (PRO85) [view usage] : d.52.9.1 |Alpha-lytic protease prodomain-like |Cation efflux protein cytoplasmic domain-like |Cation efflux protein cytoplasmic domain-like |Putative Zinc transporter CzrB |Thermus thermophilus [TaxId: 274]
d3tdea2 : (ILE154) (ASN246) [view usage] : d.130.1.0 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1mkya3 : (PRO361) (ARG437) [view usage] : d.52.5.1 |Alpha-lytic protease prodomain-like |Probable GTPase Der, C-terminal domain |Probable GTPase Der, C-terminal domain |Probable GTPase Der, C-terminal domain |Thermotoga maritima [TaxId: 2336]
d3s82a2 : (ILE154) (ASN246) [view usage] : d.130.1.0 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |automated matches |automated matches |Mycobacterium avium [TaxId: 243243]
d3imld2 : (ILE142) (ASN229) [view usage] : d.130.1.0 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 28450]
d1tbda_ : (TYR44) (GLY97) [view usage] : d.89.1.1 |Origin of replication-binding domain, RBD-like |Origin of replication-binding domain, RBD-like |The origin DNA-binding domain of SV40 T-antigen |The origin DNA-binding domain of SV40 T-antigen |Simian virus 40, Sv40 [TaxId: 10633]
d3tdec2 : (ILE154) (ASN246) [view usage] : d.130.1.0 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d3v4mb_ : (CYS406) (TYR463) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1piea2 : (LEU325) (VAL386) [view usage] : d.58.26.7 |Ferredoxin-like |GHMP Kinase, C-terminal domain |Galactokinase |Galactokinase |Lactococcus lactis [TaxId: 1358]
d2pc6a2 : (GLY21) (ASP75) [view usage] : d.58.18.6 |Ferredoxin-like |ACT-like |IlvH-like |Acetolactate synthase small subunit, IlvH |Nitrosomonas europaea [TaxId: 915]
d3bypa1 : (PRO9) (PRO85) [view usage] : d.52.9.1 |Alpha-lytic protease prodomain-like |Cation efflux protein cytoplasmic domain-like |Cation efflux protein cytoplasmic domain-like |Putative Zinc transporter CzrB |Thermus thermophilus [TaxId: 274]
d1mwwb_ : (ARG15) (PRO105) [view usage] : d.80.1.4 |Tautomerase/MIF |Tautomerase/MIF |Hypothetical protein HI1388.1 |Hypothetical protein HI1388.1 |Haemophilus influenzae [TaxId: 727]
d3imlc2 : (ILE142) (ASN229) [view usage] : d.130.1.0 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 28450]
d1fuga2 : (ALA136) (ASN225) [view usage] : d.130.1.1 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |Escherichia coli [TaxId: 562]
d3imla2 : (PRO141) (ASN229) [view usage] : d.130.1.0 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 28450]
d1ulta_ : (SER446) (GLU515) [view usage] : e.23.1.1 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |Long chain fatty acid-CoA ligase TT0168 |Thermus thermophilus [TaxId: 274]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, d.58, e.23, d.126, d.41, d.95, d.89, d.130, d.52, d.80