Tableau information
Concept source: d2gr8a1 amino acid (a.a.) range (LYS1022)(TRP1098)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS1022) (LEU1037) H1
(LYS1045) (TYR1055) E2
(GLN1058) (ILE1068) E3
(LYS1073) (ASN1083) E4
(LYS1087) (TRP1098) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 147.8° E2
E3 -30.5° 165.0° E3
E4 148.2° -36.2° 158.2° E4
E5 -33.4° 133.7° -32.8° 168.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4jrha2 : (GLY348) (PHE411) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d1utca2 : (HIS145) (GLU195) [view usage] : b.69.6.1 |7-bladed beta-propeller |Clathrin heavy-chain terminal domain |Clathrin heavy-chain terminal domain |Clathrin heavy-chain terminal domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1l3aa_ : (SER154) (PRO221) [view usage] : d.18.1.2 |ssDNA-binding transcriptional regulator domain |ssDNA-binding transcriptional regulator domain |Plant transcriptional regulator PBF-2 |Plant transcriptional regulator PBF-2 |Potato (Solanum tuberosum) [TaxId: 4113]
d2gr7a1 : (ALA998) (TRP1098) [view usage] : d.24.1.4 |Pili subunits |Pili subunits |YadA C-terminal domain-like |Adhesin Hia |Haemophilus influenzae [TaxId: 727]
d4qava2 : (ALA345) (ARG412) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Neisseria meningitidis [TaxId: 662598]
d4poia_ : (LEU35) (ALA88) [view usage] : d.98.2.0 |BLIP-like |BT0923-like |automated matches |automated matches |Bacteroides caccae [TaxId: 411901]
d1haea_ : (ALA7) (PRO50) [view usage] : g.3.11.1 |Knottins (small inhibitors, toxins, lectins) |EGF/Laminin |EGF-type module |Heregulin-alpha, EGF-like domain |Human (Homo sapiens) [TaxId: 9606]
d2gr8b_ : (SER1021) (TRP1098) [view usage] : d.24.1.4 |Pili subunits |Pili subunits |YadA C-terminal domain-like |Adhesin Hia |Haemophilus influenzae [TaxId: 727]
d2gr8a1 : (LYS1022) (TRP1098) [view usage] : d.24.1.4 |Pili subunits |Pili subunits |YadA C-terminal domain-like |Adhesin Hia |Haemophilus influenzae [TaxId: 727]
d1m1lc_ : (PRO31) (LYS125) [view usage] : d.260.1.1 |Suppressor of Fused, N-terminal domain |Suppressor of Fused, N-terminal domain |Suppressor of Fused, N-terminal domain |Suppressor of Fused, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1wnla2 : (PRO71) (ASN131) [view usage] : d.104.1.2 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Biotin holoenzyme synthetase |Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain |Pyrococcus horikoshii [TaxId: 53953]
d2nvna1 : (THR36) (PRO104) [view usage] : d.18.1.3 |ssDNA-binding transcriptional regulator domain |ssDNA-binding transcriptional regulator domain |PMN2A0962/syc2379c-like |Hypothetical protein syc2379_c |Synechococcus elongatus PCC 7942 [TaxId: 1140]
d2ffgb_ : (SER2) (ASP65) [view usage] : d.317.1.1 |YkuJ-like |YkuJ-like |YkuJ-like |Hypothetical protein YkuJ |Bacillus subtilis [TaxId: 1423]
d4ls5b2 : (ALA343) (LYS408) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
d2rete_ : (VAL31) (ALA110) [view usage] : d.24.1.7 |Pili subunits |Pili subunits |GSPII I/J protein-like |Pseudopilin EpsI |Vibrio vulnificus [TaxId: 672]
d2ddza1 : (ASP80) (ASN139) [view usage] : d.104.1.4 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |PH0223-like |Uncharacterized protein PH0223 |Pyrococcus horikoshii [TaxId: 53953]
d2reta1 : (VAL31) (ALA110) [view usage] : d.24.1.7 |Pili subunits |Pili subunits |GSPII I/J protein-like |Pseudopilin EpsI |Vibrio vulnificus [TaxId: 672]
d2nwva1 : (VAL4) (GLU73) [view usage] : d.326.1.1 |XisI-like |XisI-like |XisI-like |Hypothetical protein Ava3320 |Anabaena variabilis [TaxId: 1172]
d4dsda_ : (LEU33) (LYS87) [view usage] : d.98.2.0 |BLIP-like |BT0923-like |automated matches |automated matches |Bacteroides ovatus [TaxId: 411476]
d3duea1 : (ASP97) (ASN145) [view usage] : d.98.2.1 |BLIP-like |BT0923-like |BT0923-like |Putative periplasmic protein BVU2987 |Bacteroides vulgatus [TaxId: 821]
d2wgda2 : (VAL350) (PHE413) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d2ddze_ : (ASP80) (ASN139) [view usage] : d.104.1.4 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |PH0223-like |Uncharacterized protein PH0223 |Pyrococcus horikoshii [TaxId: 53953]
d1x2gc2 : (ASP96) (LEU154) [view usage] : d.104.1.3 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |LplA-like |Two-domain LplA, N-terminal domain |Escherichia coli [TaxId: 562]
d4ls5a2 : (ALA344) (LYS408) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
d2deqa1 : (LYS77) (ASN131) [view usage] : d.104.1.2 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Biotin holoenzyme synthetase |Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain |Pyrococcus horikoshii [TaxId: 53953]
d2it9d_ : (ASP34) (PRO106) [view usage] : d.18.1.3 |ssDNA-binding transcriptional regulator domain |ssDNA-binding transcriptional regulator domain |PMN2A0962/syc2379c-like |Hypothetical protein PMN2A_0962 |Prochlorococcus marinus [TaxId: 1219]
d4qoaa_ : (VAL98) (ASP146) [view usage] : d.98.2.0 |BLIP-like |BT0923-like |automated matches |automated matches |Bacteroides uniformis [TaxId: 411479]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.69, d.104, c.95, d.98, d.24, d.18, g.3, d.260, d.317, d.326