Tableau information
Concept source: d2lpxa_ amino acid (a.a.) range (ASN29)(GLU88)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN29) (ALA35) H1
(CYS41) (GLU46) E2
(THR53) (PHE59) E3
(HIS64) (SER74) E4
(HIS80) (GLU88) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 157.3° E2
E3 -19.1° 157.3° E3
E4 142.5° -43.8° 158.2° E4
E5 -62.5° 102.3° -55.1° 143.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2py0a_ : (ALA76) (GLN133) [view usage] : d.24.1.1 |Pili subunits |Pili subunits |Pilin |Type IV Pilin Pak |Pseudomonas aeruginosa [TaxId: 287]
d1qtpa1 : (PHE705) (ASN751) [view usage] : b.1.10.1 |Immunoglobulin-like beta-sandwich |Clathrin adaptor appendage domain |Alpha-adaptin ear subdomain-like |Alpha-adaptin AP2 ear domain, N-terminal subdomain |Mouse (Mus musculus) [TaxId: 10090]
d1w80a1 : (GLY700) (ASN751) [view usage] : b.1.10.1 |Immunoglobulin-like beta-sandwich |Clathrin adaptor appendage domain |Alpha-adaptin ear subdomain-like |Alpha-adaptin AP2 ear domain, N-terminal subdomain |Mouse (Mus musculus) [TaxId: 10090]
d1r4ya_ : (LYS59) (HIS136) [view usage] : d.1.1.3 |Microbial ribonucleases |Microbial ribonucleases |Ribotoxin |alpha-Sarcin |Fungus (Aspergillus giganteus) [TaxId: 5060]
d2khja_ : (TRP5) (TYR38) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1y6la_ : (SER0) (THR71) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Human (Homo sapiens), ubch8 [TaxId: 9606]
d3ncma_ : (ASP41) (VAL92) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Neural cell adhesion molecule (NCAM) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1h2oa_ : (VAL30) (LYS76) [view usage] : d.129.3.1 |TBP-like |Bet v1-like |Pathogenesis-related protein 10 (PR10)-like |Major tree pollen allergen |Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]
d2lpxa_ : (ASN29) (GLU88) [view usage] : d.129.3.0 |TBP-like |Bet v1-like |automated matches |automated matches |Fragaria x [TaxId: 3747]
d1vrma1 : (LEU189) (LYS253) [view usage] : d.96.2.1 |T-fold |ApbE-like |ApbE-like |Hypothetical protein TM1553 |Thermotoga maritima [TaxId: 2336]
d1b9ka1 : (ASN704) (ASN751) [view usage] : b.1.10.1 |Immunoglobulin-like beta-sandwich |Clathrin adaptor appendage domain |Alpha-adaptin ear subdomain-like |Alpha-adaptin AP2 ear domain, N-terminal subdomain |Mouse (Mus musculus) [TaxId: 10090]
d1av4a2 : (SER16) (GLU89) [view usage] : d.17.2.1 |Cystatin-like |Amine oxidase N-terminal region |Amine oxidase N-terminal region |Copper amine oxidase, domains 1 and 2 |Arthrobacter globiformis [TaxId: 1665]
d2a90a2 : (ASN150) (ARG201) [view usage] : d.289.1.1 |WWE domain |WWE domain |WWE domain |Deltex (Dx) |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1xv2c_ : (THR24) (GLU64) [view usage] : d.290.1.1 |AF0104/ALDC/Ptd012-like |AF0104/ALDC/Ptd012-like |Alpha-acetolactate decarboxylase-like |Hypothetical protein SA2394 |Staphylococcus aureus [TaxId: 1280]
d1p4ka_ : (THR227) (PHE292) [view usage] : d.153.1.5 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |(Glycosyl)asparaginase |Glycosylasparaginase (aspartylglucosaminidase, AGA) |Flavobacterium meningosepticum [TaxId: 238]
d1oqwa_ : (ALA76) (ASP132) [view usage] : d.24.1.1 |Pili subunits |Pili subunits |Pilin |Type IV Pilin Pak |Pseudomonas aeruginosa [TaxId: 287]
d1tw0a1 : (ILE29) (GLY86) [view usage] : d.129.3.1 |TBP-like |Bet v1-like |Pathogenesis-related protein 10 (PR10)-like |Plant pathogenesis-related protein PR10 |Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]
d1btva_ : (PHE30) (TYR83) [view usage] : d.129.3.1 |TBP-like |Bet v1-like |Pathogenesis-related protein 10 (PR10)-like |Major tree pollen allergen |White birch (Betula verrucosa), Bet v 1 [TaxId: 3505]
d3bq4a_ : (THR245) (TYR317) [view usage] : b.21.1.0 |Virus attachment protein globular domain |Virus attachment protein globular domain |automated matches |automated matches |Human adenovirus 35 [TaxId: 10522]
d1xv2a_ : (THR24) (GLU64) [view usage] : d.290.1.1 |AF0104/ALDC/Ptd012-like |AF0104/ALDC/Ptd012-like |Alpha-acetolactate decarboxylase-like |Hypothetical protein SA2394 |Staphylococcus aureus [TaxId: 1280]
d1ky6a1 : (PHE705) (ASN751) [view usage] : b.1.10.1 |Immunoglobulin-like beta-sandwich |Clathrin adaptor appendage domain |Alpha-adaptin ear subdomain-like |Alpha-adaptin AP2 ear domain, N-terminal subdomain |Mouse (Mus musculus) [TaxId: 10090]
d1zt3a_ : (GLU174) (ARG246) [view usage] : g.28.1.1 |Thyroglobulin type-1 domain |Thyroglobulin type-1 domain |Thyroglobulin type-1 domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1chma2 : (ARG297) (THR390) [view usage] : d.127.1.1 |Creatinase/aminopeptidase |Creatinase/aminopeptidase |Creatinase/aminopeptidase |Creatinase, catalytic (C-terminal) domain |Pseudomonas putida [TaxId: 303]
d1py3a_ : (SER15) (GLU92) [view usage] : d.1.1.2 |Microbial ribonucleases |Microbial ribonucleases |Bacterial ribonucleases |Ribonuclease Sa2 |Streptomyces aureofaciens [TaxId: 1894]
d1pv9a2 : (THR257) (THR341) [view usage] : d.127.1.1 |Creatinase/aminopeptidase |Creatinase/aminopeptidase |Creatinase/aminopeptidase |Aminopeptidase P, C-terminal domain |Pyrococcus furiosus [TaxId: 2261]
d1tjma_ : (GLY266) (ASN333) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |Synaptogamin I |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1hyrc2 : (ASN56) (PRO130) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |Class I MHC homolog |Human (Homo sapiens), Mic-a [TaxId: 9606]
d3lk3b_ : (SER90) (LYS168) [view usage] : e.43.1.2 |Subunits of heterodimeric actin filament capping protein Capz |Subunits of heterodimeric actin filament capping protein Capz |Capz beta-1 subunit |Capz beta-1 subunit |Chicken (Gallus gallus) [TaxId: 9031]
d4r4ya_ : (THR227) (ALA293) [view usage] : d.153.1.5 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |(Glycosyl)asparaginase |Glycosylasparaginase (aspartylglucosaminidase, AGA) |Elizabethkingia miricola [TaxId: 172045]
d1kp0a2 : (ARG296) (THR389) [view usage] : d.127.1.1 |Creatinase/aminopeptidase |Creatinase/aminopeptidase |Creatinase/aminopeptidase |Creatinase, catalytic (C-terminal) domain |Actinobacillus sp. [TaxId: 41114]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
d.129, b.40, d.153, d.127, d.96, b.1, d.20, d.17, d.19, b.21, e.43, b.7, d.1, d.290, d.24, d.289, g.28