Tableau information
Concept source: d3rnub1 amino acid (a.a.) range (LEU620)(ASP652)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU620) (THR625) H1
(ILE629) (ASN634) E2
(ASN634) (ASN639) E3
(PHE641) (PRO646) E4
(THR648) (ASP652) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -138.9° E2
E3 -78.8° -83.5° E3
E4 127.3° 85.8° 146.4° E4
E5 41.7° 159.8° -112.7° -86.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ueab_ : (HIS7) (LYS47) [view usage] : b.40.3.1 |OB-fold |TIMP-like |Tissue inhibitor of metalloproteinases, TIMP |TIMP-1 |Human (Homo sapiens) [TaxId: 9606]
d1fgub1 : (PHE245) (PRO288) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Replication protein A 70 KDa subunit (RPA70) |Human (Homo sapiens) [TaxId: 9606]
d1bcpd_ : (SER62) (GLU102) [view usage] : b.40.2.1 |OB-fold |Bacterial enterotoxins |Bacterial AB5 toxins, B-subunits |Pertussis toxin S4 subunit |Bordetella pertussis [TaxId: 520]
d2b29a_ : (ALA59) (LYS103) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1xjva1 : (ASN65) (GLU107) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Protection of telomeres protein 1, Pot1 |Human (Homo sapiens) [TaxId: 9606]
d1tkia_ : (LYS18) (SER45) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Titin, kinase domain |Human (Homo sapiens) [TaxId: 9606]
d4l5qa2 : (GLN205) (GLY242) [view usage] : b.40.16.0 |OB-fold |HIN-2000 domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1jmca1 : (PHE245) (PRO288) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Replication protein A 70 KDa subunit (RPA70) |Human (Homo sapiens) [TaxId: 9606]
d4j15a1 : (SER98) (VAL144) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3loia_ : (GLU11) (ALA62) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Branchiostoma belcheri [TaxId: 155462]
d1wjja_ : (GLN83) (ALA119) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Hypothetical protein At4g28440 (F20O9.120) |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1v1qb_ : (GLN60) (ASP101) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Primosomal replication protein N, PriB |Escherichia coli [TaxId: 562]
d3rn2a2 : (ASN298) (LYS340) [view usage] : b.40.16.0 |OB-fold |HIN-2000 domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3rn2b2 : (ASN298) (VAL336) [view usage] : b.40.16.0 |OB-fold |HIN-2000 domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1fgua1 : (PHE245) (CYS289) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Replication protein A 70 KDa subunit (RPA70) |Human (Homo sapiens) [TaxId: 9606]
d1jmca2 : (GLY362) (ASN402) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Replication protein A 70 KDa subunit (RPA70) |Human (Homo sapiens) [TaxId: 9606]
d1gxdc_ : (HIS7) (LYS54) [view usage] : b.40.3.1 |OB-fold |TIMP-like |Tissue inhibitor of metalloproteinases, TIMP |TIMP-2 |Human (Homo sapiens) [TaxId: 9606]
d2yw2a3 : (GLY348) (TYR385) [view usage] : b.84.2.0 |Barrel-sandwich hybrid |Rudiment single hybrid motif |automated matches |automated matches |Aquifex aeolicus [TaxId: 63363]
d2pl7a_ : (GLY6) (ILE31) [view usage] : b.138.1.1 |Hydrophobin II, HfbII |Hydrophobin II, HfbII |Hydrophobin II, HfbII |Hydrophobin II, HfbII |Trichoderma reesei [TaxId: 51453]
d2cc3a1 : (PRO148) (ASP184) [view usage] : d.17.4.26 |Cystatin-like |NTF2-like |VirB8-like |Type IV secretion system protein VirB8 |Agrobacterium tumefaciens [TaxId: 358]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.82, d.144, b.40, d.17, b.84, b.138