Tableau information
Concept source: d4rvea_ amino acid (a.a.) range (THR37)(LEU107)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR37) (GLY60) H1
(ILE62) (PRO66) E2
(ASP74) (LYS79) E3
(LYS85) (ASN97) E4
(GLU101) (LEU107) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -159.9° E2
E3 5.5° 155.5° E3
E4 144.4° -55.7° 148.3° E4
E5 -71.9° 88.8° -69.0° 141.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ry9a_ : (ASN3) (ASP59) [view usage] : d.198.1.1 |Secretion chaperone-like |Type III secretory system chaperone-like |Type III secretory system chaperone |Surface presentation of antigens protein SpaK (Spa15) |Shigella flexneri [TaxId: 623]
d3w31b_ : (PRO5) (PHE71) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Human (Homo sapiens), ubc13 [TaxId: 9606]
d2k7ha_ : (ALA26) (VAL84) [view usage] : d.129.3.1 |TBP-like |Bet v1-like |Pathogenesis-related protein 10 (PR10)-like |automated matches |Soybean (Glycine max) [TaxId: 3847]
d1mr3f_ : (LYS30) (SER76) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |ADP-ribosylation factor |Baker's yeast (Saccharomyces cerevisiae), ARF2 [TaxId: 4932]
d4guza_ : (TYR74) (ASP140) [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
d2ge5a_ : (THR37) (GLY108) [view usage] : c.52.1.2 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease EcoRV |Restriction endonuclease EcoRV |Escherichia coli [TaxId: 562]
d1b96a_ : (THR37) (THR106) [view usage] : c.52.1.2 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease EcoRV |Restriction endonuclease EcoRV |Escherichia coli [TaxId: 562]
d1h6qa_ : (ASN124) (PHE168) [view usage] : b.88.1.2 |Mss4-like |Mss4-like |Translationally controlled tumor protein TCTP (histamine-releasing factor) |Translationally controlled tumor protein TCTP (histamine-releasing factor) |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d1yrva1 : (GLY3) (PHE72) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Human (Homo sapiens), E2 U [TaxId: 9606]
d2qzwa_ : (ASP229) (PRO275) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |automated matches |Yeast (Candida albicans) [TaxId: 5476]
d1uh7a_ : (ASN229) (SER272) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Acid protease |Bread mold (Rhizopus chinensis) [TaxId: 4843]
d4rvea_ : (THR37) (LEU107) [view usage] : c.52.1.2 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease EcoRV |Restriction endonuclease EcoRV |Escherichia coli [TaxId: 562]
d2wcwd_ : (SER3) (SER63) [view usage] : c.52.1.0 |Restriction endonuclease-like |Restriction endonuclease-like |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d3cwva2 : (GLY207) (ARG263) [view usage] : d.14.1.0 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |automated matches |automated matches |Myxococcus xanthus [TaxId: 246197]
d1b97a_ : (ASP36) (LEU107) [view usage] : c.52.1.2 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease EcoRV |Restriction endonuclease EcoRV |Escherichia coli [TaxId: 562]
d1eyua_ : (LEU39) (HIS83) [view usage] : c.52.1.6 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease PvuII |Restriction endonuclease PvuII |Proteus vulgaris [TaxId: 585]
d1e5oe_ : (PRO224) (PRO269) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Endothiapepsin |Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]
d1ln2a_ : (ASP74) (SER137) [view usage] : d.129.3.2 |TBP-like |Bet v1-like |STAR domain |Phosphatidylcholine transfer protein |Human (Homo sapiens) [TaxId: 9606]
d2f4ma1 : (ARG305) (ASP357) [view usage] : d.3.1.4 |Cysteine proteinases |Cysteine proteinases |Transglutaminase core |Peptide:N-glycanase 1, PNG1 |Mouse (Mus musculus) [TaxId: 10090]
d1ob9a_ : (GLY6) (LYS64) [view usage] : c.52.1.18 |Restriction endonuclease-like |Restriction endonuclease-like |Hjc-like |Holliday-junction resolvase SSO1176 |Sulfolobus solfataricus [TaxId: 2287]
d2apra_ : (ASN228) (SER272) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Acid protease |Bread mold (Rhizopus chinensis) [TaxId: 4843]
d1ei1a1 : (GLY221) (ASP277) [view usage] : d.14.1.3 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |DNA gyrase/MutL, second domain |DNA gyrase B |Escherichia coli [TaxId: 562]
d2wcwa_ : (LYS4) (SER63) [view usage] : c.52.1.0 |Restriction endonuclease-like |Restriction endonuclease-like |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d1foka4 : (ASP421) (LEU477) [view usage] : c.52.1.12 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease FokI, C-terminal (catalytic) domain |Restriction endonuclease FokI, C-terminal (catalytic) domain |Flavobacterium okeanokoites [TaxId: 244]
d1sa3a_ : (PRO57) (ALA129) [view usage] : c.52.1.23 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease MspI |Restriction endonuclease MspI |Moraxella sp. [TaxId: 479]
d3cwvb2 : (GLY207) (ARG263) [view usage] : d.14.1.0 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |automated matches |automated matches |Myxococcus xanthus [TaxId: 246197]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.50, d.129, c.37, d.14, d.3, d.20, c.52, b.88, d.198