Tableau information
Concept source: d3gmxa_ amino acid (a.a.) range (GLY26)(GLU68)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY26) (CYS31) H1
(CYS31) (VAL35) E2
(ARG37) (ASN43) E3
(GLY51) (PHE55) E4
(ILE62) (GLU68) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -84.5° E2
E3 79.6° 163.7° E3
E4 -115.2° -31.0° 163.3° E4
E5 53.7° 138.1° -26.0° 167.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1i85b_ : (HIS54) (ALA109) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |CD86 (b7-2), N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2v9qa1 : (ASP114) (VAL165) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1f97a1 : (THR79) (LEU128) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Junction adhesion molecule, JAM, N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d3e85a_ : (VAL34) (TYR82) [view usage] : d.129.3.1 |TBP-like |Bet v1-like |Pathogenesis-related protein 10 (PR10)-like |automated matches |Yellow lupine (Lupinus luteus) [TaxId: 3873]
d2yd4a2 : (ASP175) (HIS230) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d4guza_ : (SER208) (GLN245) [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
d1gxea_ : (LYS76) (VAL128) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Cardiac myosin binding protein C, different domains |Human (Homo sapiens) [TaxId: 9606]
d4maea_ : (GLN98) (LYS143) [view usage] : b.70.1.0 |8-bladed beta-propeller |Quinoprotein alcohol dehydrogenase-like |automated matches |automated matches |Methylacidiphilum fumariolicum [TaxId: 1156937]
d2fgza4 : (ASP966) (GLN1023) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Pullulanase PulA |Klebsiella pneumoniae [TaxId: 573]
d2f73c_ : (GLU26) (THR75) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Liver fatty acid binding protein |Human (Homo sapiens) [TaxId: 9606]
d1h4ja_ : (ASN95) (GLU148) [view usage] : b.70.1.1 |8-bladed beta-propeller |Quinoprotein alcohol dehydrogenase-like |Quinoprotein alcohol dehydrogenase-like |Methanol dehydrogenase, heavy chain |Methylobacterium extorquens [TaxId: 408]
d1kmpa_ : (THR598) (GLY693) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Outer membrane transporter FecA |Escherichia coli [TaxId: 562]
d1q72h1 : (THR60) (VAL111) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 1 [TaxId: 10090]
d1xeda_ : (SER57) (LEU110) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Polymeric-immunoglobulin receptor, PIGR |Human (Homo sapiens) [TaxId: 9606]
d2ixia_ : (SER91) (ASP135) [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |dTDP-4-dehydrorhamnose 3,5-epimerase RmlC |Pseudomonas aeruginosa [TaxId: 287]
d1nbqa1 : (THR80) (LEU129) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Junction adhesion molecule, JAM, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1w5ra1 : (SER202) (PHE239) [view usage] : d.3.1.5 |Cysteine proteinases |Cysteine proteinases |Arylamine N-acetyltransferase |Arylamine N-acetyltransferase |Mycobacterium smegmatis [TaxId: 1772]
d1g72a_ : (ASP95) (GLU142) [view usage] : b.70.1.1 |8-bladed beta-propeller |Quinoprotein alcohol dehydrogenase-like |Quinoprotein alcohol dehydrogenase-like |Methanol dehydrogenase, heavy chain |Methylophilus methylotrophus, w3a1 [TaxId: 17]
d2yd5a2 : (ASP176) (VAL225) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3gmya_ : (GLY26) (GLU68) [view usage] : d.98.1.0 |BLIP-like |beta-lactamase-inhibitor protein, BLIP |automated matches |automated matches |Streptomyces clavuligerus [TaxId: 1901]
d1nbqb1 : (THR80) (LEU129) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Junction adhesion molecule, JAM, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1q25a1 : (PHE9) (SER59) [view usage] : b.64.1.1 |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |Cation-independent mannose-6-phosphate receptor (MIR-receptor) |Cow (Bos taurus) [TaxId: 9913]
d2cnxa_ : (ASP212) (GLY254) [view usage] : b.69.4.0 |7-bladed beta-propeller |WD40 repeat-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3d9wb_ : (SER213) (ALA253) [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Nocardia farcinica [TaxId: 37329]
d3nx1a_ : (LEU9) (ASP53) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Enterobacter sp. [TaxId: 418698]
d3gmxa_ : (GLY26) (GLU68) [view usage] : d.98.1.0 |BLIP-like |beta-lactamase-inhibitor protein, BLIP |automated matches |automated matches |Streptomyces clavuligerus [TaxId: 1901]
d3dara_ : (LYS199) (VAL249) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Fibroblast growth factor receptor, FGFR |Human (Homo sapiens), FGFR2a [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.70, b.82, b.69, d.129, f.4, b.60, d.3, b.1, d.98, b.71, b.64