Tableau information
Concept source: d3l4ra_ amino acid (a.a.) range (GLY11)(ASP61)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY11) (GLY17) H1
(GLY17) (VAL22) E2
(VAL22) (ASN27) E3
(ARG39) (LYS48) E4
(ASN51) (ASP61) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 64.5° E2
E3 -109.0° -61.2° E3
E4 -136.1° 158.1° 108.1° E4
E5 23.5° -42.4° -87.6° 159.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1brpa_ : (ASP16) (LEU64) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Retinol binding protein |Human (Homo sapiens) [TaxId: 9606]
d1erba_ : (ASP16) (LYS58) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Retinol binding protein |Cow (Bos taurus) [TaxId: 9913]
d1fema_ : (ASP16) (ALA57) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Retinol binding protein |Cow (Bos taurus) [TaxId: 9913]
d1jyda_ : (ASP16) (ALA57) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Retinol binding protein |Human (Homo sapiens) [TaxId: 9606]
d1pm1x_ : (LYS14) (ASN59) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Nitrophorin 2 (prolixin-s) |Rhodnius prolixus [TaxId: 13249]
d1iiua_ : (ASP16) (ALA57) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Retinol binding protein |Chicken (Gallus gallus), plasma isoform [TaxId: 9031]
d1rlbe_ : (ASP16) (ALA57) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Retinol binding protein |Chicken (Gallus gallus) [TaxId: 9031]
d1jyja_ : (ASP16) (ALA57) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Retinol binding protein |Human (Homo sapiens) [TaxId: 9606]
d2wqae_ : (ASP16) (LYS58) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Retinol binding protein |Human (Homo sapiens) [TaxId: 9606]
d2l5pa_ : (GLN45) (GLY95) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3ia8a_ : (GLU11) (HIS60) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2q39a_ : (ASP11) (GLU62) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |beta-Lactoglobulin |Cow (Bos taurus) [TaxId: 9913]
d1yupe_ : (ASP11) (GLU62) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |beta-Lactoglobulin |Reindeer (Rangifer tarandus) [TaxId: 9870]
d1dfvb_ : (GLN23) (PHE71) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Neutrophil gelatinase-associated lipocalin (NGAL) |Human (Homo sapiens) [TaxId: 9606]
d2fr2a1 : (GLN10) (ALA57) [view usage] : b.60.1.8 |Lipocalins |Lipocalins |Rv2717c-like |Hypothetical protein Rv2717c |Mycobacterium tuberculosis [TaxId: 1773]
d2q39b_ : (ASP211) (LEU258) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |beta-Lactoglobulin |Cow (Bos taurus) [TaxId: 9913]
d1fela_ : (ASP16) (ASN65) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Retinol binding protein |Cow (Bos taurus) [TaxId: 9913]
d1u17a1 : (ASN14) (ASP62) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Nitrophorin 1 |Rhodnius prolixus [TaxId: 13249]
d1aqba_ : (ASP16) (LYS58) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Retinol binding protein |Pig (Sus scrofa) [TaxId: 9823]
d3l4ra_ : (GLY11) (ASP61) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Dog (Canis familiaris) [TaxId: 9615]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.60