Protein Concepts Dictionary

Tableau information

Concept source:  d3umgg_  amino acid (a.a.) range (ARG16)(GLY94)

nSSEs in this Concept: 5

String of secondary struct.elems. (SSEs) defining this concept: EHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ARG16)   (THR22) E1
	   (THR22)   (VAL27) H2
	   (TRP29)   (HIS44) H3
	   (ASP49)   (GLY71) H4
	   (LEU78)   (GLY94) H5

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                 
H2      -93.2°   H2                          
H3      -34.1°   93.2°   H3                   
H4      123.0° -143.7°  115.7°   H4            
H5      -22.8°  -83.5°  -55.6°  130.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.2°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1zrma_ :     (LYS5)   (GLY76)   [view usage] : c.108.1.1 |HAD-like |HAD-like |HAD-related |L-2-Haloacid dehalogenase, HAD |Pseudomonas sp., strain YL [TaxId: 306]
 d1qq5a_ :     (LYS3)   (GLY74)   [view usage] : c.108.1.1 |HAD-like |HAD-like |HAD-related |L-2-Haloacid dehalogenase, HAD |Xanthobacter autotrophicus [TaxId: 280]
 d3umgh_ :    (ARG16)   (GLY94)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Rhodococcus jostii [TaxId: 101510]
 d3umgd_ :    (ARG16)   (GLY94)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Rhodococcus jostii [TaxId: 101510]
 d3umgb_ :    (ARG16)   (GLY94)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Rhodococcus jostii [TaxId: 101510]
 d1qh9a_ :     (LYS5)   (GLY76)   [view usage] : c.108.1.1 |HAD-like |HAD-like |HAD-related |L-2-Haloacid dehalogenase, HAD |Pseudomonas sp., strain YL [TaxId: 306]
 d3umgc_ :    (ARG16)   (GLY94)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Rhodococcus jostii [TaxId: 101510]
 d3umgg_ :    (ARG16)   (GLY94)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Rhodococcus jostii [TaxId: 101510]
 d1aq6a_ :     (LYS3)   (GLY74)   [view usage] : c.108.1.1 |HAD-like |HAD-like |HAD-related |L-2-Haloacid dehalogenase, HAD |Xanthobacter autotrophicus [TaxId: 280]
 d3umga_ :    (ARG16)   (GLU84)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Rhodococcus jostii [TaxId: 101510]
 d3umge_ :    (ARG16)   (GLY94)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Rhodococcus jostii [TaxId: 101510]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 c.108