Tableau information
Concept source: d1qrqa_ amino acid (a.a.) range (GLY239)(ALA324)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHHHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY239) (SER244) E1
(TRP272) (LEU278) H2
(SER279) (GLY300) H3
(THR302) (ARG313) H4
(SER318) (ALA324) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -79.0° H2
H3 -105.4° -76.9° H3
H4 161.0° 97.4° 91.7° H4
E5 -23.3° -101.1° -103.5° 158.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2rgla_ : (PHE19) (SER88) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Oryza sativa [TaxId: 39947]
d3rdka_ : (ILE131) (ASN195) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Paenibacillus sp. [TaxId: 324057]
d4ixta_ : (ASN167) (ALA240) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Rhizobium radiobacter [TaxId: 358]
d1pz1a_ : (THR199) (GLY280) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |Putative oxidoreductase YhdN |Bacillus subtilis [TaxId: 1423]
d1uwia1 : (PHE10) (LEU80) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |beta-Glycosidase |Sulfolobus solfataricus [TaxId: 2287]
d1oe5a_ : (GLU89) (HIS173) [view usage] : c.18.1.3 |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase-like |Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 |Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 |African clawed frog (Xenopus laevis) [TaxId: 8355]
d2koma_ : (SER485) (ASP549) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1vl0a_ : (ASN53) (SER100) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |DTDP-4-dehydrorhamnose reductase RfbD |Clostridium acetobutylicum [TaxId: 1488]
d1l8xb_ : (PRO38) (TYR137) [view usage] : c.92.1.1 |Chelatase-like |Chelatase |Ferrochelatase |Ferrochelatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1c7sa3 : (LYS532) (TRP616) [view usage] : c.1.8.6 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-N-acetylhexosaminidase catalytic domain |Bacterial chitobiase (beta-N-acetylhexosaminidase) |Serratia marcescens [TaxId: 615]
d3b9na_ : (LYS3) (GLY61) [view usage] : c.1.16.0 |TIM beta/alpha-barrel |Bacterial luciferase-like |automated matches |automated matches |Geobacillus thermodenitrificans [TaxId: 33940]
d3oeca_ : (ASN208) (ASP288) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium thermoresistibile [TaxId: 1797]
d4klaa_ : (LYS68) (ARG164) [view usage] : c.92.1.1 |Chelatase-like |Chelatase |Ferrochelatase |Ferrochelatase |Human (Homo sapiens) [TaxId: 9606]
d4ndne_ : (HIS77) (ILE123) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1g38a1 : (ASP100) (PHE162) [view usage] : c.66.1.27 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |DNA methylase TaqI, N-terminal domain |DNA methylase TaqI, N-terminal domain |Thermus aquaticus [TaxId: 271]
d1sg9a_ : (GLU192) (GLU246) [view usage] : c.66.1.30 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |N5-glutamine methyltransferase, HemK |N5-glutamine methyltransferase, HemK |Thermotoga maritima [TaxId: 2336]
d1gowa_ : (PHE10) (SER85) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |beta-Glycosidase |Sulfolobus solfataricus [TaxId: 2287]
d3b9nb_ : (MET1) (GLY61) [view usage] : c.1.16.0 |TIM beta/alpha-barrel |Bacterial luciferase-like |automated matches |automated matches |Geobacillus thermodenitrificans [TaxId: 33940]
d3ahta_ : (PHE19) (SER88) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Oryza sativa [TaxId: 39947]
d3en3a_ : (VAL2) (ILE51) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1vl0b_ : (ASN53) (SER100) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |DTDP-4-dehydrorhamnose reductase RfbD |Clostridium acetobutylicum [TaxId: 1488]
d1ro7a_ : (GLU147) (CYS212) [view usage] : c.130.1.1 |Alpha-2,3/8-sialyltransferase CstII |Alpha-2,3/8-sialyltransferase CstII |Alpha-2,3/8-sialyltransferase CstII |Alpha-2,3/8-sialyltransferase CstII |Campylobacter jejuni [TaxId: 197]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.94, c.2, c.92, c.66, c.18, b.36, c.130