Tableau information
Concept source: d4jj4a_ amino acid (a.a.) range (GLU7)(GLY63)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHHHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU7) (GLY13) E1
(ASP14) (CYS19) H2
(TYR37) (ALA47) H3
(ALA47) (GLY53) H4
(GLY53) (GLY63) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -127.3° H2
H3 159.5° -48.8° H3
H4 -120.5° -87.6° -80.0° H4
E5 -11.2° -130.9° 170.6° 109.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2y7rf_ : (ARG97) (ARG132) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Burkholderia sp. [TaxId: 233098]
d2y84h_ : (ARG97) (ARG132) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Burkholderia sp. [TaxId: 233098]
d1adja1 : (ASP330) (ALA360) [view usage] : c.51.1.1 |Anticodon-binding domain-like |Class II aaRS ABD-related |Anticodon-binding domain of Class II aaRS |Histidyl-tRNA synthetase (HisRS), C-terminal domain |Thermus thermophilus [TaxId: 274]
d4dnod_ : (ARG121) (GLN153) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208963]
d4f6ta_ : (LEU41) (ALA80) [view usage] : c.73.1.0 |Carbamate kinase-like |Carbamate kinase-like |automated matches |automated matches |Azotobacter vinelandii [TaxId: 354]
d2wbka3 : (MET456) (HIS511) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Bacteroides thetaiotaomicron [TaxId: 226186]
d2h0ga1 : (VAL99) (VAL137) [view usage] : c.47.1.9 |Thioredoxin fold |Thioredoxin-like |DsbC/DsbG C-terminal domain-like |Thiol:disulfide interchange protein DsbG, C-terminal domain |Escherichia coli [TaxId: 562]
d3mbda_ : (GLY68) (ASP103) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
d3zvjf_ : (VAL35) (ALA71) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
d2js7a_ : (ARG73) (LYS114) [view usage] : c.23.2.0 |Flavodoxin-like |Toll/Interleukin receptor TIR domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ogsa2 : (ARG277) (TYR313) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Glucosylceramidase, catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d1z6ra3 : (GLN336) (SER375) [view usage] : c.55.1.10 |Ribonuclease H-like motif |Actin-like ATPase domain |ROK |Mlc protein |Escherichia coli [TaxId: 562]
d3a04a_ : (HIS209) (LYS247) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Aeropyrum pernix [TaxId: 56636]
d1ak6a_ : (LYS96) (ASN138) [view usage] : d.109.1.2 |Gelsolin-like |Actin depolymerizing proteins |Cofilin-like |Destrin |Human and pig (Homo sapiens) and (Sus scrofa) [TaxId: 9606]
d4wgha_ : (ALA162) (CYS194) [view usage] : c.1.7.0 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |automated matches |automated matches |Klebsiella pneumoniae [TaxId: 573]
d4ndoa_ : (TRP40) (ALA80) [view usage] : c.73.1.0 |Carbamate kinase-like |Carbamate kinase-like |automated matches |automated matches |Azotobacter vinelandii [TaxId: 322710]
d2atxb_ : (VAL91) (GLN130) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |RhoQ |Human (Homo sapiens) [TaxId: 9606]
d1b8pa1 : (MET6) (ILE44) [view usage] : c.2.1.5 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |LDH N-terminal domain-like |Malate dehydrogenase |Aquaspirillum arcticum [TaxId: 87645]
d2gpba_ : (LYS332) (THR378) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Glycogen phosphorylase |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d3pzla_ : (LYS36) (GLU94) [view usage] : c.42.1.0 |Arginase/deacetylase |Arginase/deacetylase |automated matches |automated matches |Thermoplasma volcanium [TaxId: 273116]
d2cu2a2 : (LYS2) (ARG59) [view usage] : c.68.1.20 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |mannose-1-phosphate guanylyl transferase |Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 |Thermus thermophilus [TaxId: 274]
d1bdmb1 : (VAL4) (ILE42) [view usage] : c.2.1.5 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |LDH N-terminal domain-like |Malate dehydrogenase |Thermus flavus [TaxId: 274]
d2onfa1 : (GLY87) (PHE138) [view usage] : d.227.1.1 |OsmC-like |OsmC-like |Ohr/OsmC resistance proteins |Hypothetical protein Ta0195 |Thermoplasma acidophilum [TaxId: 2303]
d2uyfb_ : (ARG97) (ARG132) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Burkholderia cepacia [TaxId: 292]
d2va1e_ : (ARG5) (GLY50) [view usage] : c.73.1.0 |Carbamate kinase-like |Carbamate kinase-like |automated matches |automated matches |Ureaplasma parvum [TaxId: 134821]
d3kkea_ : (THR63) (ALA101) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d4jhla_ : (GLU7) (GLY63) [view usage] : c.23.10.0 |Flavodoxin-like |SGNH hydrolase |automated matches |automated matches |Geobacillus stearothermophilus [TaxId: 1422]
d2i9ua2 : (LEU224) (ALA268) [view usage] : c.1.9.9 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |SAH/MTA deaminase-like |Guanine deaminase |Clostridium acetobutylicum [TaxId: 1488]
d1bwpa_ : (GLU40) (ILE72) [view usage] : c.23.10.3 |Flavodoxin-like |SGNH hydrolase |Acetylhydrolase |Platelet-activating factor acetylhydrolase |Cow (Bos taurus), alpha1 [TaxId: 9913]
d1pc3a_ : (VAL28) (GLY62) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Mycobacterium tuberculosis [TaxId: 1773]
d1v57a1 : (VAL99) (VAL137) [view usage] : c.47.1.9 |Thioredoxin fold |Thioredoxin-like |DsbC/DsbG C-terminal domain-like |Thiol:disulfide interchange protein DsbG, C-terminal domain |Escherichia coli [TaxId: 562]
d3a9ba_ : (ARG229) (GLY283) [view usage] : c.6.1.0 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |automated matches |automated matches |Inky cap fungus (Coprinopsis cinerea) [TaxId: 5346]
d2bz1a_ : (LEU47) (HIS89) [view usage] : c.144.1.1 |RibA-like |RibA-like |RibA-like |GTP cyclohydrolase II, RibA |Escherichia coli [TaxId: 562]
d1iz9a1 : (VAL5) (ILE43) [view usage] : c.2.1.5 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |LDH N-terminal domain-like |Malate dehydrogenase |Thermus thermophilus [TaxId: 274]
d1jkia2 : (VAL344) (PRO407) [view usage] : d.81.1.3 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Dihydrodipicolinate reductase-like |Myo-inositol 1-phosphate synthase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1f0ka_ : (ARG185) (GLY220) [view usage] : c.87.1.2 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Peptidoglycan biosynthesis glycosyltransferase MurG |Peptidoglycan biosynthesis glycosyltransferase MurG |Escherichia coli [TaxId: 562]
d1coza_ : (ASP87) (ARG113) [view usage] : c.26.1.2 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Cytidylyltransferase |CTP:glycerol-3-phosphate cytidylyltransferase |Bacillus subtilis [TaxId: 1423]
d1zg7c_ : (ILE62) (PRO109) [view usage] : c.56.5.1 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Pancreatic carboxypeptidases |automated matches |Pig (Sus scrofa) [TaxId: 9823]
d4i1ia1 : (VAL4) (ILE42) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Leishmania major [TaxId: 347515]
d3ukub_ : (HIS300) (PRO348) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Actin-related protein 2, Arp2 |Cow (Bos taurus) [TaxId: 9913]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.69, c.94, c.2, c.6, c.68, c.26, c.56, c.93, c.42, c.23, c.37, c.47, c.55, c.87, d.81, c.73, c.51, d.109, d.227,
c.144