Protein Concepts Dictionary

Tableau information

Concept source:  d2gp3b_  amino acid (a.a.) range (ARG13)(VAL48)

nSSEs in this Concept: 5

String of secondary struct.elems. (SSEs) defining this concept: EHHHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ARG13)   (PRO19) E1
	   (THR20)   (ARG25) H2
	   (ASN26)   (GLY38) H3
	   (GLY38)   (GLY43) H4
	   (GLY43)   (VAL48) E5

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                 
H2     -101.2°   H2                          
H3      141.3°  110.4°   H3                   
H4     -130.9°  -66.1°  -83.5°   H4            
E5      -31.4° -126.4°  123.1°  118.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2oq7a_ :    (ILE14)   (VAL48)   [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2A core |Human (Homo sapiens) [TaxId: 9606]
 d4ai9a_ :    (ARG13)   (VAL48)   [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2A core |Human (Homo sapiens) [TaxId: 9606]
 d2vd7b_ :    (ARG13)   (VAL48)   [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2A core |Human (Homo sapiens) [TaxId: 9606]
 d4hoob_ :    (ASN17)   (ILE52)   [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2D core |Human (Homo sapiens) [TaxId: 9606]
 d2gp3a_ :    (ARG13)   (VAL48)   [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2A core |Human (Homo sapiens) [TaxId: 9606]
 d2wwja_ :    (MET15)   (VAL48)   [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2A core |Human (Homo sapiens) [TaxId: 9606]
 d3pdqb_ :    (MET15)   (VAL48)   [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2A core |Human (Homo sapiens) [TaxId: 9606]
 d3pdqa_ :    (ILE14)   (VAL48)   [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2A core |Human (Homo sapiens) [TaxId: 9606]
 d2gp3b_ :    (ARG13)   (VAL48)   [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2A core |Human (Homo sapiens) [TaxId: 9606]
 d3dxta_ :    (ILE18)   (ILE52)   [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2gp5a_ :    (ILE14)   (VAL48)   [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2A core |Human (Homo sapiens) [TaxId: 9606]
 d3rvhb_ :    (ARG13)   (VAL48)   [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2A core |Human (Homo sapiens) [TaxId: 9606]
 d2gp5b_ :    (ARG13)   (VAL48)   [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2A core |Human (Homo sapiens) [TaxId: 9606]
 d2oq7b_ :    (ARG13)   (VAL48)   [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2A core |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.82