Tableau information
Concept source: d1pdwg_ amino acid (a.a.) range (ASP3068)(GLU3116)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHHEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP3068) (ASN3076) E1
(ASN3076) (SER3085) H2
(SER3085) (LYS3099) H3
(GLY3100) (CYS3106) E4
(CYS3106) (GLU3116) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -128.5° H2
H3 -138.3° -77.1° H3
E4 -15.4° -143.9° -129.1° E4
H5 110.0° -20.8° -85.7° -124.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3dzca_ : (ALA0) (SER52) [view usage] : c.87.1.3 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-N-acetylglucosamine 2-epimerase |automated matches |Vibrio cholerae [TaxId: 666]
d2ow6a3 : (LYS82) (LEU141) [view usage] : c.6.2.1 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |alpha-mannosidase |Golgi alpha-mannosidase II |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1ig3a2 : (CYS40) (THR76) [view usage] : c.100.1.1 |Thiamin pyrophosphokinase, catalytic domain |Thiamin pyrophosphokinase, catalytic domain |Thiamin pyrophosphokinase, catalytic domain |Thiamin pyrophosphokinase, catalytic domain |Mouse (Mus musculus) [TaxId: 10090]
d1onsa_ : (ALA147) (ARG194) [view usage] : c.23.16.2 |Flavodoxin-like |Class I glutamine amidotransferase-like |DJ-1/PfpI |HSP31 (HchA; YedU) |Escherichia coli [TaxId: 562]
d1q98a_ : (ARG45) (PHE92) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Thiol peroxidase Tpx |Haemophilus influenzae [TaxId: 727]
d3u5ie_ : (LYS72) (LEU115) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d2x8wa_ : (LEU4) (GLY47) [view usage] : c.24.1.2 |Methylglyoxal synthase-like |Methylglyoxal synthase-like |Methylglyoxal synthase, MgsA |automated matches |Thermus sp. [TaxId: 405418]
d2x4da_ : (ARG12) (GLY72) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4k2hd_ : (ASP65) (LEU110) [view usage] : c.23.16.0 |Flavodoxin-like |Class I glutamine amidotransferase-like |automated matches |automated matches |Salmonella enterica [TaxId: 99287]
d2jzra_ : (LYS25) (LEU84) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain |Neisseria meningitidis serogroup A [TaxId: 65699]
d3ot1a_ : (ALA71) (GLN119) [view usage] : c.23.16.0 |Flavodoxin-like |Class I glutamine amidotransferase-like |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d2evna1 : (LYS35) (THR82) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Hypothetical protein AT1g77540 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3epra_ : (LYS6) (ASN62) [view usage] : c.108.1.14 |HAD-like |HAD-like |NagD-like |automated matches |Streptococcus agalactiae [TaxId: 216466]
d2fexa1 : (ALA66) (GLY111) [view usage] : c.23.16.2 |Flavodoxin-like |Class I glutamine amidotransferase-like |DJ-1/PfpI |Hypothetical protein Atu0886 |Agrobacterium tumefaciens [TaxId: 358]
d2abwb_ : (GLY46) (LEU93) [view usage] : c.23.16.0 |Flavodoxin-like |Class I glutamine amidotransferase-like |automated matches |automated matches |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d3p9qa2 : (ALA664) (LYS709) [view usage] : c.23.16.0 |Flavodoxin-like |Class I glutamine amidotransferase-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2ab0a1 : (VAL69) (ASP117) [view usage] : c.23.16.2 |Flavodoxin-like |Class I glutamine amidotransferase-like |DJ-1/PfpI |Protein ThiJ (YajL) |Escherichia coli [TaxId: 562]
d1g2ia_ : (ASP63) (GLY110) [view usage] : c.23.16.2 |Flavodoxin-like |Class I glutamine amidotransferase-like |DJ-1/PfpI |Intracellular protease |Pyrococcus horikoshii [TaxId: 53953]
d1j42a_ : (VAL69) (HIS115) [view usage] : c.23.16.2 |Flavodoxin-like |Class I glutamine amidotransferase-like |DJ-1/PfpI |DJ-1 |Human (Homo sapiens) [TaxId: 9606]
d1sy7a1 : (ALA619) (ALA667) [view usage] : c.23.16.3 |Flavodoxin-like |Class I glutamine amidotransferase-like |Catalase, C-terminal domain |Catalase, C-terminal domain |Fungus (Neurospora crassa) [TaxId: 5141]
d3s6oc_ : (ARG28) (HIS110) [view usage] : c.6.2.6 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |PA1517-like |automated matches |Burkholderia pseudomallei [TaxId: 28450]
d2a9ya_ : (ALA191) (VAL233) [view usage] : c.72.1.1 |Ribokinase-like |Ribokinase-like |Ribokinase-like |Adenosine kinase |Toxoplasma gondii [TaxId: 5811]
d3svlb_ : (ASP74) (ASP138) [view usage] : c.23.5.0 |Flavodoxin-like |Flavoproteins |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1pv2h_ : (ALA148) (GLY197) [view usage] : c.23.16.2 |Flavodoxin-like |Class I glutamine amidotransferase-like |DJ-1/PfpI |HSP31 (HchA; YedU) |Escherichia coli [TaxId: 562]
d2mbta_ : (ILE27) (GLN76) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1zcza1 : (MET1) (GLY42) [view usage] : c.24.1.3 |Methylglyoxal synthase-like |Methylglyoxal synthase-like |Inosicase |IMP cyclohydrolase domain of bifunctional purine biosynthesis enzyme ATIC |Thermotoga maritima [TaxId: 2336]
d1n57a_ : (ALA148) (GLY197) [view usage] : c.23.16.2 |Flavodoxin-like |Class I glutamine amidotransferase-like |DJ-1/PfpI |HSP31 (HchA; YedU) |Escherichia coli [TaxId: 562]
d1ydfa1 : (LYS5) (ASN62) [view usage] : c.108.1.14 |HAD-like |HAD-like |NagD-like |Putative hydrolase SP1407 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1zy9a2 : (LEU423) (LEU481) [view usage] : c.1.8.13 |TIM beta/alpha-barrel |(Trans)glycosidases |YicI catalytic domain-like |Alpha-galactosidase GalA catalytic domain |Thermotoga maritima [TaxId: 2336]
d2remc_ : (ILE28) (GLY86) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Xylella fastidiosa [TaxId: 2371]
d3ugja7 : (HIS1086) (ARG1145) [view usage] : c.23.16.1 |Flavodoxin-like |Class I glutamine amidotransferase-like |Class I glutamine amidotransferases (GAT) |FGAM synthase PurL, amidotransferase domain |Salmonella enterica [TaxId: 90371]
d2f17a2 : (CYS20) (THR56) [view usage] : c.100.1.1 |Thiamin pyrophosphokinase, catalytic domain |Thiamin pyrophosphokinase, catalytic domain |Thiamin pyrophosphokinase, catalytic domain |Thiamin pyrophosphokinase, catalytic domain |Mouse (Mus musculus) [TaxId: 10090]
d4lrua_ : (ASP98) (PHE142) [view usage] : c.23.16.2 |Flavodoxin-like |Class I glutamine amidotransferase-like |DJ-1/PfpI |automated matches |Candida albicans [TaxId: 237561]
d1ox4a2 : (SER43) (LEU89) [view usage] : c.23.16.1 |Flavodoxin-like |Class I glutamine amidotransferase-like |Class I glutamine amidotransferases (GAT) |GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF |Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
d1ig3b2 : (CYS40) (THR76) [view usage] : c.100.1.1 |Thiamin pyrophosphokinase, catalytic domain |Thiamin pyrophosphokinase, catalytic domain |Thiamin pyrophosphokinase, catalytic domain |Thiamin pyrophosphokinase, catalytic domain |Mouse (Mus musculus) [TaxId: 10090]
d1izya_ : (ALA148) (GLY197) [view usage] : c.23.16.2 |Flavodoxin-like |Class I glutamine amidotransferase-like |DJ-1/PfpI |HSP31 (HchA; YedU) |Escherichia coli [TaxId: 562]
d1k1xb3 : (GLU2) (LYS62) [view usage] : c.6.2.2 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |4-alpha-glucanotransferase, N-terminal domain |4-alpha-glucanotransferase, N-terminal domain |Thermococcus litoralis [TaxId: 2265]
d2rema_ : (ILE28) (GLY86) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Xylella fastidiosa [TaxId: 2371]
d1s8ad_ : (HIS13) (GLY57) [view usage] : c.24.1.2 |Methylglyoxal synthase-like |Methylglyoxal synthase-like |Methylglyoxal synthase, MgsA |Methylglyoxal synthase, MgsA |Escherichia coli [TaxId: 562]
d3n7ta_ : (GLY103) (ILE150) [view usage] : c.23.16.0 |Flavodoxin-like |Class I glutamine amidotransferase-like |automated matches |automated matches |Fungus (Coccidioides immitis) [TaxId: 5501]
d2c31a1 : (VAL217) (LEU254) [view usage] : c.31.1.3 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |Pyruvate oxidase and decarboxylase, middle domain |Oxalyl-CoA decarboxylase |Oxalobacter formigenes [TaxId: 847]
d4k2ha_ : (ASP65) (LEU110) [view usage] : c.23.16.0 |Flavodoxin-like |Class I glutamine amidotransferase-like |automated matches |automated matches |Salmonella enterica [TaxId: 99287]
d1cf9a1 : (ALA664) (LYS709) [view usage] : c.23.16.3 |Flavodoxin-like |Class I glutamine amidotransferase-like |Catalase, C-terminal domain |Catalase, C-terminal domain |Escherichia coli, HPII [TaxId: 562]
d3dina3 : (PRO500) (ARG534) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Translocation ATPase SecA, nucleotide-binding domains |Thermotoga maritima MSB8 [TaxId: 243274]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.6, i.1, c.108, c.72, c.23, c.37, c.47, c.87, c.31, d.108, c.24, c.100