Protein Concepts Dictionary

Tableau information

Concept source:  d2iywa_  amino acid (a.a.) range (THR96)(LEU166)

nSSEs in this Concept: 5

String of secondary struct.elems. (SSEs) defining this concept: EHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (THR96)  (ILE102) E1
	  (ALA104)  (ARG110) H2
	  (ARG125)  (VAL143) H3
	  (THR145)  (ASN151) E4
	  (PRO155)  (LEU166) H5

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                 
H2       88.0°   H2                          
H3     -154.2°  113.6°   H3                   
E4      -22.8°   71.3° -151.2°   E4            
H5      154.1° -117.9°   13.6°  162.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.4°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1avpa_ :    (LYS65)  (ASN135)   [view usage] : d.3.1.7 |Cysteine proteinases |Cysteine proteinases |Adenain-like |Human adenovirus 2 proteinase, adenain |Mastadenovirus H2 [TaxId: 10515]
 d3d2ca_ :   (LEU124)  (LEU159)   [view usage] : c.69.1.18 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Bacterial lipase |Lipase A |Bacillus subtilis [TaxId: 1423]
 d2axpb_ :    (ALA96)  (LEU166)   [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Hypothetical protein YorR |Bacillus subtilis [TaxId: 1423]
 d2h92a_ :   (LYS139)  (SER216)   [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |CMP kinase |Staphylococcus aureus [TaxId: 1280]
 d3adka_ :   (THR113)  (LEU193)   [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Adenylate kinase |Pig (Sus scrofa) [TaxId: 9823]
 d2i3da1 :   (GLY149)  (GLY213)   [view usage] : c.69.1.36 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Atu1826-like |Hypothetical protein Atu1826 |Agrobacterium tumefaciens [TaxId: 358]
 d1kdoa_ :   (PRO142)  (ALA220)   [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |CMP kinase |Escherichia coli [TaxId: 562]
 d3dyva_ :   (PRO179)  (GLN240)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Lactobacillus rhamnosus [TaxId: 486408]
 d1qf9a_ :   (LEU115)  (GLY193)   [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |UMP/CMP kinase |Slime mold (Dictyostelium discoideum) [TaxId: 44689]
 d1ki9b_ :   (ILE118)  (ARG192)   [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Adenylate kinase |Methanococcus thermolithotrophicus [TaxId: 2186]
 d2b61a1 :   (ARG295)  (GLY357)   [view usage] : c.69.1.40 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |O-acetyltransferase |Homoserine O-acetyltransferase |Haemophilus influenzae [TaxId: 727]
 d1fsaa_ :   (SER207)  (VAL257)   [view usage] : e.7.1.1 |Carbohydrate phosphatase |Carbohydrate phosphatase |Inositol monophosphatase/fructose-1,6-bisphosphatase-like |Fructose-1,6-bisphosphatase |Pig (Sus scrofa) [TaxId: 9823]
 d4tmka_ :   (ASP134)  (LEU211)   [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Thymidylate kinase |Escherichia coli [TaxId: 562]
 d3jweb_ :   (PHE241)  (THR304)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1kdra_ :   (PRO142)  (ARG221)   [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |CMP kinase |Escherichia coli [TaxId: 562]
 d1n7ua_ :   (LEU429)  (TYR460)   [view usage] : b.126.1.1 |Adsorption protein p2 |Adsorption protein p2 |Adsorption protein p2 |Adsorption protein p2 |Bacteriophage PRD1 [TaxId: 10658]
 d2bwja_ :   (GLN116)  (LEU198)   [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1rdxa_ :   (SER207)  (VAL257)   [view usage] : e.7.1.1 |Carbohydrate phosphatase |Carbohydrate phosphatase |Inositol monophosphatase/fructose-1,6-bisphosphatase-like |Fructose-1,6-bisphosphatase |Pig (Sus scrofa) [TaxId: 9823]
 d1z83a_ :   (THR113)  (LEU194)   [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2ukda_ :   (LEU115)  (GLY193)   [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |UMP/CMP kinase |Slime mold (Dictyostelium discoideum) [TaxId: 44689]
 d3og9a_ :   (ASP146)  (LYS206)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Lactococcus lactis [TaxId: 272623]
 d3jw8a_ :   (PHE241)  (THR304)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4ir8b_ :   (LYS206)  (GLN253)   [view usage] : e.7.1.0 |Carbohydrate phosphatase |Carbohydrate phosphatase |automated matches |automated matches |Toxoplasma gondii [TaxId: 508771]
 d1azwa_ :   (GLY258)  (ALA313)   [view usage] : c.69.1.7 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Proline iminopeptidase-like |Proline iminopeptidase |Xanthomonas campestris, pv. citri [TaxId: 339]
 d1grqa_ :   (TRP116)  (VAL176)   [view usage] : c.37.1.3 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Chloramphenicol phosphotransferase |Chloramphenicol phosphotransferase |Streptomyces venezuelae [TaxId: 54571]
 d1khtb_ :   (ASP116)  (ARG192)   [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Adenylate kinase |Methanococcus voltae [TaxId: 2188]
 d3tvta2 :   (GLN893)  (SER961)   [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
 d3hjub_ :   (PHE231)  (THR296)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2axpa1 :    (ALA96)  (GLU165)   [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Hypothetical protein YorR |Bacillus subtilis [TaxId: 1423]
 d1qhna_ :   (TRP116)  (VAL176)   [view usage] : c.37.1.3 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Chloramphenicol phosphotransferase |Chloramphenicol phosphotransferase |Streptomyces venezuelae [TaxId: 54571]
 d1nksa_ :   (ILE119)  (LYS194)   [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Adenylate kinase |Sulfolobus acidocaldarius [TaxId: 2285]
 d3dyia_ :   (PRO179)  (ASN242)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Lactobacillus rhamnosus [TaxId: 486408]
 d2i3db_ :   (GLY149)  (GLY213)   [view usage] : c.69.1.36 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Atu1826-like |Hypothetical protein Atu1826 |Agrobacterium tumefaciens [TaxId: 358]
 d1ispa_ :   (LEU124)  (GLY175)   [view usage] : c.69.1.18 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Bacterial lipase |Lipase A |Bacillus subtilis [TaxId: 1423]
 d1nrwa_ :   (ALA108)  (ALA163)   [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Hypothetical protein YwpJ |Bacillus subtilis [TaxId: 1423]
 d1wm1a_ :   (ALA260)  (GLY316)   [view usage] : c.69.1.7 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Proline iminopeptidase-like |Proline aminopeptidase |Serratia marcescens [TaxId: 615]
 d2fuka1 :   (GLN157)  (VAL212)   [view usage] : c.69.1.36 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Atu1826-like |XC6422 protein |Xanthomonas campestris [TaxId: 339]
 d1ki9a_ :   (ILE118)  (ARG192)   [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Adenylate kinase |Methanococcus thermolithotrophicus [TaxId: 2186]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.69,   c.108,    c.37,     d.3,     e.7,   b.126