Protein Concepts Dictionary

Tableau information

Concept source:  d2id2a_  amino acid (a.a.) range (LEU146)(ALA196)

nSSEs in this Concept: 5

String of secondary struct.elems. (SSEs) defining this concept: EHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (LEU146)  (PRO152) E1
	  (VAL157)  (LYS163) H2
	  (ALA165)  (GLY171) H3
	  (ALA175)  (PRO179) E4
	  (SER183)  (ALA196) H5

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                 
H2      158.2°   H2                          
H3     -167.4°   21.9°   H3                   
E4      -12.1°  159.3° -178.8°   E4            
H5      139.2°  -42.7°  -28.3°  150.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.4°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1y5yb_ :  (ASN1065) (GLY1148)   [view usage] : d.14.1.12 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Formaldehyde-activating enzyme, FAE |Formaldehyde-activating enzyme, FAE |Methylobacterium extorquens [TaxId: 408]
 d1wnba_ :   (VAL142)  (LEU187)   [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Putative betaine aldehyde dehydrogenase YdcW |Escherichia coli [TaxId: 562]
 d1d1qa_ :     (LYS6)   (GLY69)   [view usage] : c.44.1.1 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |Low-molecular-weight phosphotyrosine protein phosphatases |Tyrosine phosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d3e8qa_ :   (PRO226)  (GLY305)   [view usage] : c.42.1.1 |Arginase/deacetylase |Arginase/deacetylase |Arginase-like amidino hydrolases |Arginase |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d4pmxa_ :   (PHE255)  (HIS324)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Xanthomonas axonopodis [TaxId: 190486]
 d4pmya_ :   (PHE255)  (HIS324)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Xanthomonas axonopodis [TaxId: 190486]
 d1y60d_ :  (ASN3065) (GLY3148)   [view usage] : d.14.1.12 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Formaldehyde-activating enzyme, FAE |Formaldehyde-activating enzyme, FAE |Methylobacterium extorquens [TaxId: 408]
 d2xdra_ :   (VAL146)  (ALA195)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
 d3prld_ :   (GLY154)  (ALA205)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Bacillus halodurans [TaxId: 86665]
 d4pn2a_ :   (PHE255)  (HIS324)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Xanthomonas axonopodis [TaxId: 190486]
 d2id2a_ :   (LEU146)  (ALA196)   [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |automated matches |Streptococcus mutans [TaxId: 1309]
 d2esda_ :   (LEU146)  (GLY197)   [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |automated matches |Streptococcus mutans [TaxId: 1309]
 d1yqna_ :     (GLU0)  (GLY121)   [view usage] : d.79.5.1 |Bacillus chorismate mutase-like |IpsF-like |IpsF-like |2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF |Escherichia coli [TaxId: 562]
 d1tbla1 :   (PRO226)  (GLY305)   [view usage] : c.42.1.1 |Arginase/deacetylase |Arginase/deacetylase |Arginase-like amidino hydrolases |Arginase |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d3wu6e_ :   (LYS623)  (GLY694)   [view usage] : d.14.1.10 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |ATP-dependent protease Lon (La), catalytic domain |ATP-dependent protease Lon (La), catalytic domain |Escherichia coli [TaxId: 562]
 d1y60a_ :    (ASN65)  (GLY148)   [view usage] : d.14.1.12 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Formaldehyde-activating enzyme, FAE |Formaldehyde-activating enzyme, FAE |Methylobacterium extorquens [TaxId: 408]
 d1d6ta_ :    (ASP41)  (LYS110)   [view usage] : d.14.1.2 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |RNase P protein |RNase P protein |Staphylococcus aureus [TaxId: 1280]
 d3k2wd_ :   (VAL150)  (LEU192)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pseudoalteromonas atlantica [TaxId: 342610]
 d1qi1a_ :   (LEU146)  (GLY197)   [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Aldehyde reductase (dehydrogenase), ALDH |Streptococcus mutans [TaxId: 1309]
 d2id2c_ :   (LEU148)  (GLY197)   [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |automated matches |Streptococcus mutans [TaxId: 1309]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1,    c.82,    c.42,    d.14,    d.79,    c.44