Tableau information
Concept source: d1qgda3 amino acid (a.a.) range (GLU551)(GLN592)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHHEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU551) (THR557) E1
(THR557) (VAL561) H2
(VAL561) (GLY575) H3
(LYS577) (SER582) E4
(THR586) (GLN592) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -115.4° H2
H3 -164.7° -49.3° H3
E4 -15.8° -128.2° -171.7° E4
H5 130.5° 98.2° -60.2° 115.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1blza_ : (ALA7) (ILE65) [view usage] : b.82.2.1 |Double-stranded beta-helix |Clavaminate synthase-like |Penicillin synthase-like |Isopenicillin N synthase |Emericella nidulans [TaxId: 162425]
d4drxa1 : (ARG64) (HIS107) [view usage] : c.32.1.1 |Tubulin nucleotide-binding domain-like |Tubulin nucleotide-binding domain-like |Tubulin, GTPase domain |automated matches |Sheep (Ovis aries) [TaxId: 9940]
d1nbwa3 : (ALA552) (ASN607) [view usage] : c.55.1.6 |Ribonuclease H-like motif |Actin-like ATPase domain |ATPase domain of dehydratase reactivase alpha subunit |ATPase domain of the glycerol dehydratase reactivase alpha subunit |Klebsiella pneumoniae [TaxId: 573]
d4db3a2 : (HIS247) (LEU299) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Vibrio vulnificus [TaxId: 672]
d3bpma_ : (LYS135) (TYR168) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |automated matches |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d2d0oc3 : (PRO550) (HIS603) [view usage] : c.55.1.6 |Ribonuclease H-like motif |Actin-like ATPase domain |ATPase domain of dehydratase reactivase alpha subunit |Diol dehydratase-reactivating factor large subunit DdrA |Klebsiella oxytoca [TaxId: 571]
d1bk0a_ : (ALA7) (ILE65) [view usage] : b.82.2.1 |Double-stranded beta-helix |Clavaminate synthase-like |Penicillin synthase-like |Isopenicillin N synthase |Emericella nidulans [TaxId: 162425]
d1d2ra_ : (ASP139) (ILE204) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Tryptophanyl-tRNA synthetase (TrpRS) |Bacillus stearothermophilus [TaxId: 1422]
d4dg5a_ : (THR15) (THR73) [view usage] : c.86.1.0 |Phosphoglycerate kinase |Phosphoglycerate kinase |automated matches |automated matches |Staphylococcus aureus [TaxId: 282458]
d1umbc_ : (GLY166) (THR216) [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |Branched-chain alpha-keto acid dehydrogenase, PP module |Thermus thermophilus [TaxId: 274]
d1ahua1 : (ARG274) (GLY322) [view usage] : d.58.32.1 |Ferredoxin-like |FAD-linked oxidases, C-terminal domain |Vanillyl-alcohol oxidase-like |Vanillyl-alcohol oxidase |Fungus (Penicillium simplicissimum) [TaxId: 69488]
d1woqa2 : (GLU216) (HIS263) [view usage] : c.55.1.10 |Ribonuclease H-like motif |Actin-like ATPase domain |ROK |Inorganic polyphosphate/ATP-glucomannokinase PPGMK |Arthrobacter sp. KM [TaxId: 184230]
d1ogsa2 : (GLY80) (PHE147) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Glucosylceramidase, catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d2d0oa3 : (PRO550) (PHE606) [view usage] : c.55.1.6 |Ribonuclease H-like motif |Actin-like ATPase domain |ATPase domain of dehydratase reactivase alpha subunit |Diol dehydratase-reactivating factor large subunit DdrA |Klebsiella oxytoca [TaxId: 571]
d2g77b1 : (ALA109) (ILE156) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Rab-33b |Mouse (Mus musculus) [TaxId: 10090]
d2ebfx2 : (ARG910) (GLY959) [view usage] : c.150.1.2 |EreA/ChaN-like |EreA/ChaN-like |PMT domain-like |Dermonecrotic toxin, ToxA |Pasteurella multocida [TaxId: 747]
d1r9ja3 : (GLN546) (GLN586) [view usage] : c.48.1.1 |TK C-terminal domain-like |TK C-terminal domain-like |Transketolase C-terminal domain-like |Transketolase (TK), C-domain |Leishmania mexicana mexicana [TaxId: 44270]
d1w17b_ : (VAL93) (THR135) [view usage] : c.6.2.3 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |NodB-like polysaccharide deacetylase |automated matches |Bacillus subtilis [TaxId: 1423]
d2zhxe_ : (LEU163) (GLY200) [view usage] : c.18.1.0 |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d3i6ya_ : (PRO47) (HIS117) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Oleispira antarctica [TaxId: 188908]
d2bjsa_ : (ASN8) (ILE65) [view usage] : b.82.2.1 |Double-stranded beta-helix |Clavaminate synthase-like |Penicillin synthase-like |automated matches |Emericella nidulans [TaxId: 162425]
d2pnkl_ : (TYR219) (GLY273) [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]
d2pnkf_ : (TYR219) (GLY273) [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]
d4bmsf_ : (GLY129) (VAL192) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Ralstonia sp. [TaxId: 517192]
d3zkua_ : (ASN8) (HIS62) [view usage] : b.82.2.1 |Double-stranded beta-helix |Clavaminate synthase-like |Penicillin synthase-like |Isopenicillin N synthase |Emericella nidulans [TaxId: 162425]
d1to6a_ : (GLN82) (LEU147) [view usage] : c.141.1.1 |Glycerate kinase I |Glycerate kinase I |Glycerate kinase I |Glycerate kinase GlxK |Neisseria meningitidis, (serogroup A) [TaxId: 487]
d1ny1a_ : (VAL93) (THR135) [view usage] : c.6.2.3 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |NodB-like polysaccharide deacetylase |Probable polysaccharide deacetylase PdaA |Bacillus subtilis [TaxId: 1423]
d3e4da_ : (PRO44) (HIS115) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d4gvha_ : (ASP114) (SER195) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Salmonella enterica [TaxId: 99287]
d2vsna2 : (ASP325) (GLY372) [view usage] : c.87.1.12 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |O-GlcNAc transferase, OGT |O-GlcNAc transferase, OGT |Xanthomonas campestris [TaxId: 314565]
d3cxma_ : (LEU303) (GLY340) [view usage] : c.18.1.0 |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase-like |automated matches |automated matches |Leishmania naiffi [TaxId: 5678]
d1qgda3 : (GLU551) (GLN592) [view usage] : c.48.1.1 |TK C-terminal domain-like |TK C-terminal domain-like |Transketolase C-terminal domain-like |Transketolase (TK), C-domain |Escherichia coli [TaxId: 562]
d1ozha3 : (ALA510) (GLY551) [view usage] : c.36.1.9 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Pyruvate oxidase and decarboxylase PP module |Catabolic acetolactate synthase |Klebsiella pneumoniae [TaxId: 573]
d2qeee_ : (TYR219) (GLY273) [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]
d1w17a_ : (ARG92) (THR135) [view usage] : c.6.2.3 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |NodB-like polysaccharide deacetylase |automated matches |Bacillus subtilis [TaxId: 1423]
d2gupa2 : (GLY226) (LYS287) [view usage] : c.55.1.10 |Ribonuclease H-like motif |Actin-like ATPase domain |ROK |Hypothetical protein SP2142 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1itza3 : (ASP564) (GLN605) [view usage] : c.48.1.1 |TK C-terminal domain-like |TK C-terminal domain-like |Transketolase C-terminal domain-like |Transketolase (TK), C-domain |Maize (Zea mays) [TaxId: 4577]
d2aa4a2 : (GLN235) (GLU289) [view usage] : c.55.1.10 |Ribonuclease H-like motif |Actin-like ATPase domain |ROK |N-acetylmannosamine kinase NanK |Escherichia coli [TaxId: 562]
d3j38a_ : (ILE74) (GLN113) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d3copa_ : (MET1) (VAL51) [view usage] : c.87.1.0 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |automated matches |automated matches |Escherichia coli [TaxId: 562]
d2pnke_ : (TYR219) (GLY273) [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]
d1hb1a_ : (ALA7) (ILE65) [view usage] : b.82.2.1 |Double-stranded beta-helix |Clavaminate synthase-like |Penicillin synthase-like |Isopenicillin N synthase |Emericella nidulans [TaxId: 162425]
d2qeek_ : (TYR219) (GLY273) [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]
d2d0pc3 : (PRO550) (HIS603) [view usage] : c.55.1.6 |Ribonuclease H-like motif |Actin-like ATPase domain |ATPase domain of dehydratase reactivase alpha subunit |Diol dehydratase-reactivating factor large subunit DdrA |Klebsiella oxytoca [TaxId: 571]
d3raja_ : (VAL204) (ASP252) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |ADP ribosyl cyclase |Human (Homo sapiens) [TaxId: 9606]
d1odna_ : (ALA7) (ILE65) [view usage] : b.82.2.1 |Double-stranded beta-helix |Clavaminate synthase-like |Penicillin synthase-like |Isopenicillin N synthase |Emericella nidulans [TaxId: 162425]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, b.82, c.69, c.2, c.6, d.58, i.1, c.26, c.23, c.37, c.36, c.18, c.55, c.86, d.3, c.87, c.32, c.48, c.141, c.150