Tableau information
Concept source: d1vpab_ amino acid (a.a.) range (PRO158)(TRP218)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHHEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO158) (SER162) E1
(GLU164) (HIS170) H2
(ASP179) (LYS185) H3
(VAL188) (GLU194) E4
(PHE204) (TRP218) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 96.5° H2
H3 29.8° 84.6° H3
E4 148.0° -115.6° -146.5° E4
H5 -84.8° -168.5° 101.6° 63.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3q7ub_ : (PRO166) (VAL229) [view usage] : c.68.1.0 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d3d8va1 : (VAL184) (GLY263) [view usage] : c.68.1.0 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1v8pb_ : (LYS28) (ARG86) [view usage] : c.120.1.1 |PIN domain-like |PIN domain-like |PIN domain |Hypothetical protein PAE2754 |Pyrobaculum aerophilum [TaxId: 13773]
d2xwlb_ : (PRO159) (HIS222) [view usage] : c.68.1.0 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 1772]
d2xwnb_ : (PRO166) (VAL229) [view usage] : c.68.1.0 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1v8oh_ : (LYS28) (GLY87) [view usage] : c.120.1.1 |PIN domain-like |PIN domain-like |PIN domain |Hypothetical protein PAE2754 |Pyrobaculum aerophilum [TaxId: 13773]
d1g97a2 : (THR172) (GLY251) [view usage] : c.68.1.5 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |UDP-glucose pyrophosphorylase |N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2xwla_ : (PRO159) (HIS222) [view usage] : c.68.1.0 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 1772]
d1vpaa_ : (PRO158) (TRP218) [view usage] : c.68.1.13 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Cytidylytransferase |4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) |Thermotoga maritima [TaxId: 2336]
d3vc3f_ : (LYS291) (MET367) [view usage] : c.79.1.0 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |automated matches |Soybean (Glycine max) [TaxId: 3847]
d1vpab_ : (PRO158) (TRP218) [view usage] : c.68.1.13 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Cytidylytransferase |4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) |Thermotoga maritima [TaxId: 2336]
d1fwya2 : (ILE172) (GLY251) [view usage] : c.68.1.5 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |UDP-glucose pyrophosphorylase |N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain |Escherichia coli [TaxId: 562]
d2qkxa1 : (VAL184) (GLY263) [view usage] : c.68.1.0 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |automated matches |automated matches |Mycobacterium tuberculosis
d1i52a_ : (PRO166) (THR228) [view usage] : c.68.1.13 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Cytidylytransferase |4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) |Escherichia coli [TaxId: 562]
d2xwma_ : (PRO159) (ALA219) [view usage] : c.68.1.0 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d1w55a1 : (PRO148) (LEU201) [view usage] : c.68.1.13 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Cytidylytransferase |IspD/IspF bifunctional enzyme, CDP-me synthase domain |Campylobacter jejuni [TaxId: 197]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.68, c.79, c.120