Tableau information
Concept source: d3bbnb1 amino acid (a.a.) range (LYS69)(TRP108)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHHEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS69) (LYS77) E1
(LYS77) (ALA81) H2
(ALA81) (ARG92) H3
(HIS94) (LYS98) E4
(GLY103) (TRP108) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -117.2° H2
H3 -164.4° -48.9° H3
E4 -11.3° -114.2° -155.9° E4
H5 155.6° 62.2° -20.5° 144.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1fxwf_ : (ASP41) (ASN87) [view usage] : c.23.10.3 |Flavodoxin-like |SGNH hydrolase |Acetylhydrolase |Platelet-activating factor acetylhydrolase |Cow (Bos taurus), alpha2 [TaxId: 9913]
d1rrma_ : (GLN32) (SER87) [view usage] : e.22.1.2 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |Iron-containing alcohol dehydrogenase |Lactaldehyde reductase FucO |Escherichia coli [TaxId: 562]
d2aifa1 : (GLU57) (GLY99) [view usage] : d.79.3.1 |Bacillus chorismate mutase-like |L30e-like |L30e/L7ae ribosomal proteins |Ribosomal protein L7ae |Cryptosporidium parvum [TaxId: 5807]
d1e20a_ : (LYS133) (GLN200) [view usage] : c.34.1.1 |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1bgxt2 : (ASP60) (GLY133) [view usage] : c.120.1.2 |PIN domain-like |PIN domain-like |5' to 3' exonuclease catalytic domain |5' to 3' exonuclease domain of DNA polymerase Taq |Thermus aquaticus [TaxId: 271]
d1jjfa_ : (LEU222) (GLY280) [view usage] : c.69.1.2 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carboxylesterase |Feruloyl esterase domain of the cellulosomal xylanase z |Clostridium thermocellum [TaxId: 1515]
d3k7pa_ : (ARG3) (VAL53) [view usage] : c.121.1.0 |Ribose/Galactose isomerase RpiB/AlsB |Ribose/Galactose isomerase RpiB/AlsB |automated matches |automated matches |Trypanosoma cruzi [TaxId: 353153]
d2j00b1 : (GLY66) (PHE105) [view usage] : c.23.15.1 |Flavodoxin-like |Ribosomal protein S2 |Ribosomal protein S2 |Ribosomal protein S2 |Thermus thermophilus [TaxId: 274]
d1rrmb_ : (GLN32) (GLY88) [view usage] : e.22.1.2 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |Iron-containing alcohol dehydrogenase |Lactaldehyde reductase FucO |Escherichia coli [TaxId: 562]
d3tcra_ : (ARG24) (VAL74) [view usage] : c.57.1.0 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
d1ocba_ : (VAL132) (ASN187) [view usage] : c.6.1.1 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |Glycosyl hydrolases family 6, cellulases |Cellobiohydrolase II (Cel6) |Humicola insolens, Cel6a [TaxId: 34413]
d1mvla_ : (LYS133) (GLN200) [view usage] : c.34.1.1 |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2bdua1 : (GLU253) (THR296) [view usage] : c.108.1.21 |HAD-like |HAD-like |Pyrimidine 5'-nucleotidase (UMPH-1) |Cytosolic 5'-nucleotidase III |Mouse (Mus musculus) [TaxId: 10090]
d1bwra_ : (GLU40) (GLY87) [view usage] : c.23.10.3 |Flavodoxin-like |SGNH hydrolase |Acetylhydrolase |Platelet-activating factor acetylhydrolase |Cow (Bos taurus), alpha1 [TaxId: 9913]
d1l5ja3 : (ASP436) (LEU487) [view usage] : c.83.1.1 |Aconitase iron-sulfur domain |Aconitase iron-sulfur domain |Aconitase iron-sulfur domain |Aconitase B, C-terminal domain |Escherichia coli [TaxId: 562]
d1ibja_ : (GLU172) (ALA213) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |Cystathionine beta-lyase, CBL |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3cogd_ : (ASP105) (ILE147) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1b1aa_ : (LEU87) (GLU137) [view usage] : c.23.6.1 |Flavodoxin-like |Cobalamin (vitamin B12)-binding domain |Cobalamin (vitamin B12)-binding domain |Glutamate mutase, small subunit |Clostridium cochlearium [TaxId: 1494]
d1rd4a_ : (ARG256) (ILE306) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) |Human (Homo sapiens) [TaxId: 9606]
d4nbua_ : (GLY138) (ALA209) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Bacillus sp. [TaxId: 161544]
d3ho7a_ : (GLY91) (GLY139) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Porphyromonas gingivalis [TaxId: 837]
d1mvna_ : (LYS133) (SER199) [view usage] : c.34.1.1 |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2fuca1 : (ASP211) (PRO256) [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Phosphomannomutase 1 |Human (Homo sapiens) [TaxId: 9606]
d1vs5b1 : (GLY64) (TRP103) [view usage] : c.23.15.1 |Flavodoxin-like |Ribosomal protein S2 |Ribosomal protein S2 |Ribosomal protein S2 |Escherichia coli [TaxId: 562]
d4ppyb_ : (LYS52) (ARG94) [view usage] : c.23.10.0 |Flavodoxin-like |SGNH hydrolase |automated matches |automated matches |Bacteroides fragilis [TaxId: 272559]
d1fp4b_ : (ASN289) (GLY337) [view usage] : c.92.2.3 |Chelatase-like |"Helical backbone" metal receptor |Nitrogenase iron-molybdenum protein |Nitrogenase iron-molybdenum protein, beta chain |Azotobacter vinelandii [TaxId: 354]
d4a05a_ : (VAL158) (ASN213) [view usage] : c.6.1.1 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |Glycosyl hydrolases family 6, cellulases |automated matches |Chaetomium thermophilum [TaxId: 209285]
d2m8ca_ : (LYS115) (GLY156) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Escherichia coli [TaxId: 536056]
d2i54a_ : (GLU200) (LEU243) [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |automated matches |Trypanosome (Leishmania mexicana) [TaxId: 5665]
d4jgga_ : (GLN1) (ARG55) [view usage] : c.23.10.0 |Flavodoxin-like |SGNH hydrolase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1r64a2 : (VAL169) (ILE260) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Kexin, N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4bndb_ : (ILE207) (GLU251) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Lactococcus lactis [TaxId: 416870]
d3dt6a_ : (GLU40) (ASN86) [view usage] : c.23.10.3 |Flavodoxin-like |SGNH hydrolase |Acetylhydrolase |automated matches |Cow (Bos taurus) [TaxId: 9913]
d3b5ea1 : (GLY157) (GLY214) [view usage] : c.69.1.14 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carboxylesterase/thioesterase 1 |Uncharacterized protein Mll8374 |Mesorhizobium loti [TaxId: 381]
d1a23a_ : (GLN21) (LEU82) [view usage] : c.47.1.13 |Thioredoxin fold |Thioredoxin-like |DsbA-like |Disulfide-bond formation facilitator (DsbA) |Escherichia coli [TaxId: 562]
d3k7pb_ : (THR2) (VAL53) [view usage] : c.121.1.0 |Ribose/Galactose isomerase RpiB/AlsB |Ribose/Galactose isomerase RpiB/AlsB |automated matches |automated matches |Trypanosoma cruzi [TaxId: 353153]
d3bbnb1 : (LYS69) (TRP108) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, chloroplast (70S ribosome functional complex) |Spinach (Spinacia oleracea) [TaxId: 3562]
d3rhma_ : (GLY591) (ASP639) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2zj3a_ : (GLN612) (GLY664) [view usage] : c.80.1.0 |SIS domain |SIS domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2pl5a1 : (ARG302) (GLU363) [view usage] : c.69.1.40 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |O-acetyltransferase |Homoserine O-acetyltransferase |Leptospira interrogans [TaxId: 173]
d1h1lb_ : (GLU143) (PHE206) [view usage] : c.92.2.3 |Chelatase-like |"Helical backbone" metal receptor |Nitrogenase iron-molybdenum protein |Nitrogenase iron-molybdenum protein, beta chain |Klebsiella pneumoniae [TaxId: 573]
d1ixcb2 : (SER94) (GLY139) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |LysR-type regulatory protein CbnR |Ralstonia eutropha [TaxId: 106590]
d2psfa_ : (PRO251) (ASN309) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Renilla reniformis [TaxId: 6136]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.67, c.69, c.94, c.2, c.6, i.1, c.108, c.82, c.92, c.80, e.22, c.23, c.47, c.62, c.57, c.41, c.121, d.79, c.120, c.34,
c.83