Tableau information
Concept source: d4kw6c_ amino acid (a.a.) range (TYR35)(THR87)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHHEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(TYR35) (PRO42) E1
(PRO50) (PHE60) H2
(PHE60) (ASN67) H3
(ASN67) (THR75) E4
(SER77) (THR87) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -157.5° H2
H3 -150.0° -45.2° H3
E4 -20.4° -154.6° 130.0° E4
H5 90.3° -79.8° -119.6° 110.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2c4na1 : (LYS4) (GLY60) [view usage] : c.108.1.14 |HAD-like |HAD-like |NagD-like |NagD |Escherichia coli [TaxId: 562]
d2b2nb_ : (VAL67) (GLN115) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Transcription-repair coupling factor, TRCF |Escherichia coli [TaxId: 562]
d1g5qa_ : (LEU5) (ILE44) [view usage] : c.34.1.1 |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Epidermin modifying enzyme (peptidyl-cysteine decarboxylase) EpiD |Staphylococcus epidermidis [TaxId: 1282]
d1yf1a1 : (TRP32) (SER84) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Alkyl hydroperoxide reductase AhpC |Salmonella typhimurium [TaxId: 90371]
d2b2na1 : (GLN65) (GLN115) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Transcription-repair coupling factor, TRCF |Escherichia coli [TaxId: 562]
d3ve7a_ : (ARG3) (LEU37) [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Metallosphaera sedula [TaxId: 399549]
d1r4wa_ : (ARG6) (GLY52) [view usage] : c.47.1.13 |Thioredoxin fold |Thioredoxin-like |DsbA-like |Mitochondrial class kappa glutathione S-transferase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2c4ea_ : (GLU132) (GLN167) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Methanococcus jannaschii [TaxId: 2190]
d2yivx_ : (VAL254) (GLY305) [view usage] : e.26.1.2 |Prismane protein-like |Prismane protein-like |Carbon monoxide dehydrogenase |Ni-containing carbon monoxide dehydrogenase |Carboxydothermus hydrogenoformans [TaxId: 129958]
d1ab7a_ : (LYS1) (THR63) [view usage] : c.9.1.1 |Barstar-like |Barstar-related |Barstar-related |Barstar (barnase inhibitor) |Bacillus amyloliquefaciens [TaxId: 1390]
d4hnoa_ : (LYS212) (GLY283) [view usage] : c.1.15.0 |TIM beta/alpha-barrel |Xylose isomerase-like |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d4k1xa2 : (LYS121) (GLU164) [view usage] : c.25.1.0 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |automated matches |automated matches |Rhodobacter capsulatus [TaxId: 1061]
d3js3a_ : (ILE19) (ASN58) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Clostridium difficile [TaxId: 272563]
d2q9ua1 : (LYS79) (LEU119) [view usage] : d.157.1.3 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |ROO N-terminal domain-like |Nitric oxide reductase N-terminal domain |Giardia intestinalis [TaxId: 5741]
d1szna2 : (HIS196) (LYS244) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Melibiase |Trichoderma reesei [TaxId: 51453]
d1obra_ : (GLU61) (ILE120) [view usage] : c.56.5.2 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Carboxypeptidase T |Carboxypeptidase T |Thermoactinomyces vulgaris [TaxId: 2026]
d1pw5a_ : (GLU6) (GLY62) [view usage] : c.108.1.14 |HAD-like |HAD-like |NagD-like |Hypothetical protein TM1742 |Thermotoga maritima [TaxId: 2336]
d2yntb_ : (GLY105) (GLY150) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d2qdxa2 : (LYS108) (THR157) [view usage] : c.25.1.1 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |Reductases |Ferredoxin reductase (flavodoxin reductase) |Pseudomonas aeruginosa [TaxId: 287]
d2hd7a_ : (ASP248) (PRO314) [view usage] : d.109.1.0 |Gelsolin-like |Actin depolymerizing proteins |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4dbeb_ : (ARG5) (ASP38) [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 555311]
d1oaoa_ : (VAL276) (GLY327) [view usage] : e.26.1.2 |Prismane protein-like |Prismane protein-like |Carbon monoxide dehydrogenase |Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH) subunit |Moorella thermoacetica [TaxId: 1525]
d3htoa_ : (ILE51) (GLY92) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |automated matches |Influenza a virus (a/wdk/jx/12416/2005(h1n1)) [TaxId: 666057]
d3r31a_ : (SER263) (LYS305) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d4cqmf_ : (LYS170) (LEU237) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1cd5a_ : (GLU197) (MET245) [view usage] : c.124.1.1 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |NagB-like |Glucosamine 6-phosphate deaminase/isomerase NagB |Escherichia coli [TaxId: 562]
d1vlca_ : (HIS-1) (ARG48) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |3-isopropylmalate dehydrogenase, IPMDH |Thermotoga maritima [TaxId: 2336]
d1g63b_ : (GLY3) (ILE44) [view usage] : c.34.1.1 |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Epidermin modifying enzyme (peptidyl-cysteine decarboxylase) EpiD |Staphylococcus epidermidis [TaxId: 1282]
d1t9aa2 : (LYS215) (ALA256) [view usage] : c.36.1.5 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Pyruvate oxidase and decarboxylase Pyr module |Acetohydroxyacid synthase catalytic subunit |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1yexa1 : (TRP32) (SER84) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Alkyl hydroperoxide reductase AhpC |Salmonella typhimurium [TaxId: 90371]
d1z63a1 : (ARG519) (ARG547) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Helicase of the SNF2/Rad54 hamily |Sulfolobus solfataricus [TaxId: 2287]
d3w02a_ : (PHE78) (LYS132) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |PcrB protein homolog YerE |Staphylococcus aureus [TaxId: 418127]
d1su6a_ : (VAL254) (ARG303) [view usage] : e.26.1.2 |Prismane protein-like |Prismane protein-like |Carbon monoxide dehydrogenase |Ni-containing carbon monoxide dehydrogenase |Carboxydothermus hydrogenoformans [TaxId: 129958]
d3vm5a1 : (THR11) (GLN63) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Oryzias latipes [TaxId: 8090]
d1ayea1 : (ILE62) (LYS122) [view usage] : c.56.5.1 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Pancreatic carboxypeptidases |Carboxypeptidase A |Human (Homo sapiens) [TaxId: 9606]
d1aqla_ : (ILE188) (PRO233) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Bile-salt activated lipase (cholesterol esterase) |Cow (Bos taurus) [TaxId: 9913]
d2x7va_ : (LYS212) (GLY283) [view usage] : c.1.15.0 |TIM beta/alpha-barrel |Xylose isomerase-like |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d1z8ha_ : (SER5) (ARG63) [view usage] : c.23.10.6 |Flavodoxin-like |SGNH hydrolase |Hypothetical protein alr1529 |Hypothetical protein alr1529 |Nostoc sp. PCC 7120 [TaxId: 103690]
d3s42a_ : (ILE18) (THR57) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Salmonella enterica [TaxId: 90371]
d4iuob_ : (ILE18) (THR57) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Salmonella enterica [TaxId: 99287]
d3ckma1 : (THR433) (ALA468) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |YraM C-terminal domain |Haemophilus influenzae [TaxId: 727]
d1we0a1 : (SER34) (GLU84) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Alkyl hydroperoxide reductase AhpC |Amphibacillus xylanus [TaxId: 1449]
d4dbea_ : (ARG5) (LEU39) [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 555311]
d1xxua_ : (ASN31) (SER84) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Putative peroxiredoxin Rv2238c/MT2298 |Mycobacterium tuberculosis [TaxId: 1773]
d1g63a_ : (GLY3) (ILE44) [view usage] : c.34.1.1 |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Epidermin modifying enzyme (peptidyl-cysteine decarboxylase) EpiD |Staphylococcus epidermidis [TaxId: 1282]
d3ve7b_ : (ARG3) (LEU37) [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Metallosphaera sedula [TaxId: 399549]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, b.19, c.69, c.2, c.108, c.82, c.56, d.157, c.77, c.124, c.93, c.72, c.23, c.37, c.36, c.47, c.25, d.109, e.26, c.34,
c.9