Protein Concepts Dictionary

Tableau information

Concept source:  d1f4jc_  amino acid (a.a.) range (GLY227)(THR291)

nSSEs in this Concept: 5

String of secondary struct.elems. (SSEs) defining this concept: EHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (GLY227)  (LYS237) E1
	  (SER246)  (GLU256) H2
	  (TYR260)  (GLY272) H3
	  (TYR274)  (MET284) E4
	  (THR285)  (THR291) H5

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                 
H2       80.5°   H2                          
H3       95.2°   86.9°   H3                   
E4      144.0° -127.2° -107.5°   E4            
H5       71.9° -110.5°  155.5°   76.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.4°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1qwma_ :   (GLY208)  (LYS272)   [view usage] : e.5.1.1 |Heme-dependent catalase-like |Heme-dependent catalase-like |Heme-dependent catalases |Catalase I |Helicobacter pylori [TaxId: 210]
 d1dgbd_ :   (GLY227)  (THR291)   [view usage] : e.5.1.1 |Heme-dependent catalase-like |Heme-dependent catalase-like |Heme-dependent catalases |Catalase I |Human (Homo sapiens) [TaxId: 9606]
 d1m7sb_ :   (LYS235)  (LYS293)   [view usage] : e.5.1.1 |Heme-dependent catalase-like |Heme-dependent catalase-like |Heme-dependent catalases |Catalase I |Pseudomonas syringae [TaxId: 317]
 d1tgua_ :   (GLY226)  (ILE290)   [view usage] : e.5.1.1 |Heme-dependent catalase-like |Heme-dependent catalase-like |Heme-dependent catalases |automated matches |Cow (Bos taurus) [TaxId: 9913]
 d3re8a_ :   (GLY226)  (ILE290)   [view usage] : e.5.1.1 |Heme-dependent catalase-like |Heme-dependent catalase-like |Heme-dependent catalases |Catalase I |Cow (Bos taurus) [TaxId: 9913]
 d1m7sa_ :   (GLY229)  (LYS293)   [view usage] : e.5.1.1 |Heme-dependent catalase-like |Heme-dependent catalase-like |Heme-dependent catalases |Catalase I |Pseudomonas syringae [TaxId: 317]
 d3hb6a_ :   (ASN206)  (ASP277)   [view usage] : e.5.1.1 |Heme-dependent catalase-like |Heme-dependent catalase-like |Heme-dependent catalases |Catalase I |Proteus mirabilis [TaxId: 584]
 d1si8a_ :   (GLY206)  (LEU269)   [view usage] : e.5.1.1 |Heme-dependent catalase-like |Heme-dependent catalase-like |Heme-dependent catalases |Catalase I |Enterococcus faecalis [TaxId: 1351]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   e.5