Tableau information
Concept source: d2pgcc_ amino acid (a.a.) range (LYS113)(GLY168)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS113) (ARG119) E1
(ASP128) (ALA138) H2
(SER139) (GLY145) H3
(LEU147) (GLY152) E4
(TYR163) (GLY168) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 150.7° H2
H3 161.3° -31.9° H3
E4 -25.6° -175.9° 152.1° E4
E5 171.0° -20.4° -18.2° 163.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2gg6a_ : (SER261) (SER308) [view usage] : d.68.2.2 |IF3-like |EPT/RTPC-like |Enolpyruvate transferase, EPT |5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase |Agrobacterium sp. [TaxId: 268951]
d1pbua_ : (SER320) (ARG378) [view usage] : d.58.46.1 |Ferredoxin-like |eEF1-gamma domain |eEF1-gamma domain |Elongation factor 1-gamma C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d4f6ra1 : (GLY34) (PRO63) [view usage] : c.32.1.1 |Tubulin nucleotide-binding domain-like |Tubulin nucleotide-binding domain-like |Tubulin, GTPase domain |automated matches |Sheep (Ovis aries) [TaxId: 9940]
d3st6a_ : (SER15) (ALA58) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |Salicylate synthase MbtI |Mycobacterium tuberculosis [TaxId: 1773]
d1vr7b_ : (GLY5) (SER61) [view usage] : d.156.1.2 |S-adenosylmethionine decarboxylase |S-adenosylmethionine decarboxylase |Bacterial S-adenosylmethionine decarboxylase |automated matches |Thermotoga maritima [TaxId: 2336]
d1wd6a_ : (THR3) (LEU55) [view usage] : d.58.4.12 |Ferredoxin-like |Dimeric alpha+beta barrel |Hypothetical protein YdhR |Hypothetical protein YdhR |Escherichia coli [TaxId: 562]
d3dgeb2 : (GLN321) (TYR364) [view usage] : d.122.1.3 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |Histidine kinase |automated matches |Thermotoga maritima [TaxId: 2336]
d1za1b1 : (GLY15) (GLU62) [view usage] : d.58.2.1 |Ferredoxin-like |Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain |Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain |Aspartate carbamoyltransferase |Escherichia coli [TaxId: 562]
d1tuwa_ : (ALA2) (ALA55) [view usage] : d.58.4.8 |Ferredoxin-like |Dimeric alpha+beta barrel |Polyketide synthesis cyclase |Tetracenomycin polyketide synthesis protein TcmI |Streptomyces glaucescens [TaxId: 1907]
d3rmtc_ : (SER253) (THR300) [view usage] : d.68.2.0 |IF3-like |EPT/RTPC-like |automated matches |automated matches |Bacillus halodurans [TaxId: 86665]
d1tmia_ : (GLY5) (VAL59) [view usage] : d.156.1.2 |S-adenosylmethionine decarboxylase |S-adenosylmethionine decarboxylase |Bacterial S-adenosylmethionine decarboxylase |S-adenosylmethionine decarboxylase (SamDC, SpeH) |Thermotoga maritima [TaxId: 2336]
d2pgcc_ : (LYS113) (GLY168) [view usage] : d.58.4.23 |Ferredoxin-like |Dimeric alpha+beta barrel |Marine metagenome family DABB3 |Uncharacterized protein GOS_2596953 |Environmental samples
d1gpja3 : (ASP3) (SER56) [view usage] : d.58.39.1 |Ferredoxin-like |Glutamyl tRNA-reductase catalytic, N-terminal domain |Glutamyl tRNA-reductase catalytic, N-terminal domain |Glutamyl tRNA-reductase catalytic, N-terminal domain |Methanopyrus kandleri [TaxId: 2320]
d1rkia1 : (HIS4) (SER45) [view usage] : d.308.1.2 |THUMP domain |THUMP domain-like |PAE0736-like |Hypothetical protein PAE0736 |Pyrobaculum aerophilum [TaxId: 13773]
d1z59a3 : (THR170) (PRO216) [view usage] : d.122.1.2 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |DNA gyrase/MutL, N-terminal domain |Topoisomerase VI-B subunit |Sulfolobus shibatae [TaxId: 2286]
d2pgcb_ : (LYS113) (GLY168) [view usage] : d.58.4.23 |Ferredoxin-like |Dimeric alpha+beta barrel |Marine metagenome family DABB3 |Uncharacterized protein GOS_2596953 |Environmental samples
d1k3eb_ : (TYR48) (PRO100) [view usage] : d.198.1.1 |Secretion chaperone-like |Type III secretory system chaperone-like |Type III secretory system chaperone |Secretion chaperone CesT |Escherichia coli [TaxId: 562]
d4jasa2 : (GLN321) (TYR364) [view usage] : d.122.1.3 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |Histidine kinase |automated matches |Thermotoga maritima [TaxId: 243274]
d2bg1a1 : (TYR388) (GLY440) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Penicillin-binding protein 1b, transpeptidase domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d4e57a_ : (VAL302) (VAL360) [view usage] : d.153.1.2 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin acylase, catalytic domain |automated matches |Pseudomonas sp. [TaxId: 81841]
d3aevb1 : (LYS33) (SER80) [view usage] : d.51.1.0 |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d1kfia4 : (TYR446) (ASP490) [view usage] : d.129.2.1 |TBP-like |Phosphoglucomutase, C-terminal domain |Phosphoglucomutase, C-terminal domain |Exocytosis-sensitive phosphoprotein, pp63/parafusin |Ciliate (Paramecium tetraurelia) [TaxId: 5888]
d2pgca1 : (LYS113) (GLY168) [view usage] : d.58.4.23 |Ferredoxin-like |Dimeric alpha+beta barrel |Marine metagenome family DABB3 |Uncharacterized protein GOS_2596953 |Environmental samples
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, d.68, d.58, d.129, d.122, d.153, c.32, d.51, d.198, d.308, d.161, d.156