Tableau information
Concept source: d4pr6a_ amino acid (a.a.) range (HIS10)(PHE59)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(HIS10) (ASN16) E1
(LYS23) (ALA32) H2
(ALA32) (GLY38) H3
(GLY38) (SER48) E4
(GLY53) (PHE59) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 120.8° H2
H3 156.2° -41.3° H3
E4 -39.1° 152.8° 146.8° E4
E5 160.9° -44.8° -25.2° 159.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1vnaa_ : (LYS1) (GLY50) [view usage] : g.3.7.1 |Knottins (small inhibitors, toxins, lectins) |Scorpion toxin-like |Long-chain scorpion toxins |Scorpion toxin |Centruroides sculpturatus, variant 1 [TaxId: 218467]
d2hp6b_ : (SER21) (ASN54) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Class D beta-lactamase |Pseudomonas aeruginosa, OXA-10 [TaxId: 287]
d3v4dd_ : (THR74) (ILE126) [view usage] : d.79.1.0 |Bacillus chorismate mutase-like |YjgF-like |automated matches |automated matches |Escherichia coli [TaxId: 217992]
d2wnyb_ : (HIS6) (ASP57) [view usage] : d.77.1.0 |RL5-like |RL5-like |automated matches |automated matches |Methanothermobacter thermautotrophicus [TaxId: 145262]
d3pnla_ : (VAL46) (PRO83) [view usage] : c.119.1.2 |DAK1/DegV-like |DAK1/DegV-like |DAK1 |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1raid1 : (ASN63) (LEU99) [view usage] : d.58.2.1 |Ferredoxin-like |Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain |Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain |Aspartate carbamoyltransferase |Escherichia coli [TaxId: 562]
d1r0va2 : (LEU261) (ARG302) [view usage] : c.52.2.1 |Restriction endonuclease-like |tRNA-intron endonuclease catalytic domain-like |tRNA-intron endonuclease catalytic domain-like |Dimeric tRNA splicing endonuclease, domains 2 and 4 |Archaeoglobus fulgidus [TaxId: 2234]
d2h8ca_ : (MET53) (GLY118) [view usage] : d.79.6.1 |Bacillus chorismate mutase-like |Holliday junction resolvase RusA |Holliday junction resolvase RusA |automated matches |Escherichia coli [TaxId: 562]
d2cpia1 : (ASN109) (ILE164) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |E3 ubiquitin protein ligase CNOT4 |Mouse (Mus musculus) [TaxId: 10090]
d2cwwb2 : (HIS116) (PRO164) [view usage] : c.66.1.51 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |hypothetical RNA methyltransferase |Hypothetical protein TTHA1280, middle and C-terminal domains |Thermus thermophilus [TaxId: 274]
d2pofa1 : (LEU74) (SER144) [view usage] : d.13.1.4 |HIT-like |HIT-like |CDH-like |CDP-diacylglycerol pyrophosphatase CDH |Escherichia coli [TaxId: 562]
d1hr6b2 : (LEU272) (ASP343) [view usage] : d.185.1.1 |LuxS/MPP-like metallohydrolase |LuxS/MPP-like metallohydrolase |MPP-like |Mitochondrial processing peptidase (MPP) beta chain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2otma1 : (TYR93) (ALA151) [view usage] : d.79.1.1 |Bacillus chorismate mutase-like |YjgF-like |YjgF/L-PSP |Hypothetical protein SO1960 |Shewanella oneidensis [TaxId: 70863]
d1uw4a_ : (SER51) (ASN100) [view usage] : d.58.7.4 |Ferredoxin-like |RNA-binding domain, RBD |Smg-4/UPF3 |RNA processing protein UPF3x, RRM domain |Human (Homo sapiens) [TaxId: 9606]
d1zo0a1 : (HIS171) (LEU218) [view usage] : d.108.1.7 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |Ornithine decarboxylase antizyme-like |Ornithine decarboxylase antizyme |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2k06a_ : (ALA4) (GLN72) [view usage] : d.58.42.1 |Ferredoxin-like |N-utilization substance G protein NusG, N-terminal domain |N-utilization substance G protein NusG, N-terminal domain |N-utilization substance G protein NusG, N-terminal domain |Escherichia coli [TaxId: 562]
d1jxca_ : (CYS11) (ASP61) [view usage] : g.3.7.5 |Knottins (small inhibitors, toxins, lectins) |Scorpion toxin-like |Plant defensins |Trypsin/chymotrypsin inhibitor ATT |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1o5oa_ : (ILE72) (PRO119) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Uracil PRTase, Upp |Thermotoga maritima [TaxId: 2336]
d2yiza_ : (HIS3) (ARG65) [view usage] : d.230.2.0 |Dodecin subunit-like |Dodecin-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d2e5ha_ : (SER10) (LEU59) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1gupa1 : (MET97) (SER173) [view usage] : d.13.1.2 |HIT-like |HIT-like |Hexose-1-phosphate uridylyltransferase |Galactose-1-phosphate uridylyltransferase |Escherichia coli [TaxId: 562]
d2joea1 : (LEU31) (GLU89) [view usage] : d.371.1.1 |YehR-like |YehR-like |YehR-like |Hypothetical lipoprotein YehR |Escherichia coli [TaxId: 562]
d2otmc_ : (TYR93) (ALA151) [view usage] : d.79.1.1 |Bacillus chorismate mutase-like |YjgF-like |YjgF/L-PSP |Hypothetical protein SO1960 |Shewanella oneidensis [TaxId: 70863]
d1w5ea2 : (ALA285) (GLY339) [view usage] : d.79.2.1 |Bacillus chorismate mutase-like |Tubulin C-terminal domain-like |Tubulin, C-terminal domain |Cell-division protein FtsZ |Methanococcus jannaschii [TaxId: 2190]
d2ifea_ : (ALA124) (PRO176) [view usage] : d.68.1.1 |IF3-like |Translation initiation factor IF3, C-terminal domain |Translation initiation factor IF3, C-terminal domain |Translation initiation factor IF3, C-terminal domain |Escherichia coli [TaxId: 562]
d1w5812 : (ALA285) (GLY339) [view usage] : d.79.2.1 |Bacillus chorismate mutase-like |Tubulin C-terminal domain-like |Tubulin, C-terminal domain |Cell-division protein FtsZ |Methanococcus jannaschii [TaxId: 2190]
d2b63g1 : (MET1) (ARG75) [view usage] : i.8.1.1 |RNA polymerase |RNA polymerase |RNA polymerase |Complete 12-subunit RNA polymerase II complex |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2vxaa_ : (HIS4) (THR66) [view usage] : d.230.2.0 |Dodecin subunit-like |Dodecin-like |automated matches |automated matches |Halorhodospira halophila [TaxId: 1053]
d2wkib_ : (SER21) (ASN54) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Class D beta-lactamase |Pseudomonas aeruginosa, OXA-10 [TaxId: 287]
d2ec2b_ : (TYR11) (VAL65) [view usage] : d.58.57.1 |Ferredoxin-like |Transposase IS200-like |Transposase IS200-like |automated matches |Sulfolobus tokodaii [TaxId: 111955]
d2i54a_ : (MET125) (PRO183) [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |automated matches |Trypanosome (Leishmania mexicana) [TaxId: 5665]
d2hgla_ : (PHE11) (GLU60) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1e3ma1 : (TYR474) (PRO504) [view usage] : a.113.1.1 |DNA repair protein MutS, domain III |DNA repair protein MutS, domain III |DNA repair protein MutS, domain III |DNA repair protein MutS, domain III |Escherichia coli [TaxId: 562]
d3pnka_ : (ALA47) (PRO83) [view usage] : c.119.1.2 |DAK1/DegV-like |DAK1/DegV-like |DAK1 |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2ayma1 : (GLN9) (THR53) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Splicesomal U1A protein |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d2otmb_ : (TYR93) (ALA151) [view usage] : d.79.1.1 |Bacillus chorismate mutase-like |YjgF-like |YjgF/L-PSP |Hypothetical protein SO1960 |Shewanella oneidensis [TaxId: 70863]
d2dita1 : (ARG16) (SER70) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |HIV Tat-specific factor 1 |Human (Homo sapiens) [TaxId: 9606]
d1itpa_ : (PHE6) (GLY47) [view usage] : d.58.3.2 |Ferredoxin-like |Protease propeptides/inhibitors |Subtilase propeptides/inhibitors |Proteinase A inhibitor 1, POIA1 |Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
d4lbpa_ : (PHE3) (MSE60) [view usage] : d.58.4.0 |Ferredoxin-like |Dimeric alpha+beta barrel |automated matches |automated matches |Burkholderia cepacia [TaxId: 292]
d2nl8a_ : (ALA157) (HIS201) [view usage] : d.89.1.1 |Origin of replication-binding domain, RBD-like |Origin of replication-binding domain, RBD-like |The origin DNA-binding domain of SV40 T-antigen |The origin DNA-binding domain of SV40 T-antigen |Simian virus 40, Sv40 [TaxId: 10633]
d4lbha_ : (PHE3) (MET60) [view usage] : d.58.4.0 |Ferredoxin-like |Dimeric alpha+beta barrel |automated matches |automated matches |Burkholderia cepacia [TaxId: 292]
d1onib_ : (VAL77) (PRO131) [view usage] : d.79.1.1 |Bacillus chorismate mutase-like |YjgF-like |YjgF/L-PSP |14.5 kda translational inhibitor protein, L-PSP |Human (Homo sapiens) [TaxId: 9606]
d4lrya_ : (ALA47) (PRO83) [view usage] : c.119.1.2 |DAK1/DegV-like |DAK1/DegV-like |DAK1 |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1n97a_ : (MET1) (PHE47) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cyp175a1 |Thermus thermophilus [TaxId: 274]
d1z1za1 : (LEU62) (THR128) [view usage] : d.323.1.1 |Phage tail protein-like |Phage tail protein-like |Lambda phage gpU-like |Minor tail protein gpU |Bacteriophage lambda [TaxId: 10710]
d1rlta_ : (PHE147) (ILE187) [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Sugar phosphatase SupH (YbiV) |Escherichia coli [TaxId: 562]
d2i79a_ : (ARG123) (ILE171) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 170187]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, a.104, d.68, d.58, c.108, c.66, d.185, d.108, c.61, d.79, c.52, d.13, i.8, d.89, c.119, a.113, d.77, g.3, d.230, d.371,
d.323