Tableau information
Concept source: d1i2ka_ amino acid (a.a.) range (GLY24)(ALA108)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY24) (ARG30) E1
(LEU38) (MET54) H2
(TRP60) (GLN74) H3
(LEU79) (ARG85) E4
(ALA100) (ALA108) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 169.9° H2
H3 -37.0° 137.8° H3
E4 170.0° -18.0° 152.7° E4
E5 -26.1° 145.9° -15.3° 163.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1a0ga_ : (GLY29) (GLU117) [view usage] : e.17.1.1 |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase |Bacillus sp., strain YM-1 [TaxId: 1409]
d3cjrb2 : (VAL5) (LYS70) [view usage] : d.47.1.1 |Ribosomal L11/L12e N-terminal domain |Ribosomal L11/L12e N-terminal domain |Ribosomal L11/L12e N-terminal domain |Ribosomal protein L11, N-terminal domain |Thermus thermophilus [TaxId: 274]
d1daaa_ : (GLY29) (GLU117) [view usage] : e.17.1.1 |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase |Bacillus sp., strain YM-1 [TaxId: 1409]
d3cjsb1 : (VAL5) (LYS70) [view usage] : d.47.1.1 |Ribosomal L11/L12e N-terminal domain |Ribosomal L11/L12e N-terminal domain |Ribosomal L11/L12e N-terminal domain |Ribosomal protein L11, N-terminal domain |Thermus thermophilus [TaxId: 274]
d3lqsa_ : (GLY29) (THR115) [view usage] : e.17.1.1 |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase |Bacillus sp., strain YM-1 [TaxId: 1409]
d1i1la_ : (THR33) (PHE124) [view usage] : e.17.1.1 |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |Branched-chain aminoacid aminotransferase |Escherichia coli [TaxId: 562]
d4af1a1 : (LEU34) (GLU116) [view usage] : d.91.1.0 |N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 |N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 |automated matches |automated matches |Halobacterium salinarum [TaxId: 478009]
d1g2wa_ : (GLY29) (GLU117) [view usage] : e.17.1.1 |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase |Bacillus stearothermophilus [TaxId: 1422]
d4v19k_ : (GLY18) (GLN84) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d1i2ka_ : (GLY24) (ALA108) [view usage] : e.17.1.1 |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |Aminodeoxychorismate lyase |Escherichia coli [TaxId: 562]
d3egvb1 : (VAL5) (LYS70) [view usage] : d.47.1.1 |Ribosomal L11/L12e N-terminal domain |Ribosomal L11/L12e N-terminal domain |Ribosomal L11/L12e N-terminal domain |Ribosomal protein L11, N-terminal domain |Thermus thermophilus [TaxId: 274]
d4doia_ : (PHE100) (LYS177) [view usage] : d.36.1.0 |Chalcone isomerase |Chalcone isomerase |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d4doib_ : (PHE1100) (LYS1177) [view usage] : d.36.1.0 |Chalcone isomerase |Chalcone isomerase |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2o34b_ : (ASP183) (GLY242) [view usage] : d.96.2.2 |T-fold |ApbE-like |DVU1097-like |automated matches |Desulfovibrio vulgaris [TaxId: 881]
d1jx0a_ : (LYS91) (PHE164) [view usage] : d.36.1.1 |Chalcone isomerase |Chalcone isomerase |Chalcone isomerase |Chalcone isomerase |Alfalfa (Medicago sativa) [TaxId: 3879]
d2yzbe2 : (ARG180) (ASN266) [view usage] : d.96.1.4 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |Urate oxidase (uricase) |automated matches |Arthrobacter globiformis [TaxId: 1665]
d1a0gb_ : (GLY29) (THR115) [view usage] : e.17.1.1 |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase |Bacillus sp., strain YM-1 [TaxId: 1409]
d5daaa_ : (GLY29) (THR115) [view usage] : e.17.1.1 |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase |Bacillus sp., strain YM-1 [TaxId: 1409]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
i.1, d.96, e.17, d.47, d.91, d.36