Tableau information
Concept source: d2ypra_ amino acid (a.a.) range (GLY73)(PHE128)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY73) (ASP79) E1
(ASP79) (LYS91) H2
(TYR98) (ASN112) H3
(ILE113) (GLY119) E4
(TYR122) (PHE128) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 93.3° H2
H3 -170.5° 84.0° H3
E4 -68.1° -160.6° -113.3° E4
E5 146.1° 54.8° 35.3° 144.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.5° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1b70b2 : (GLU402) (SER448) [view usage] : a.6.1.1 |Putative DNA-binding domain |Putative DNA-binding domain |Domains B1 and B5 of PheRS-beta, PheT |Domains B1 and B5 of PheRS-beta, PheT |Thermus thermophilus [TaxId: 274]
d1r8da_ : (MET1) (SER42) [view usage] : a.6.1.3 |Putative DNA-binding domain |Putative DNA-binding domain |DNA-binding N-terminal domain of transcription activators |Multidrug transporter activator MtaN |Bacillus subtilis [TaxId: 1423]
d3kq7a_ : (ARG49) (THR106) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |MAP kinase p38 |Human (Homo sapiens) [TaxId: 9606]
d1mdmb_ : (TRP361) (CYS416) [view usage] : a.4.5.21 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |ets domain |ETS-1 transcription factor, residues 331-440 |Mouse (Mus musculus) [TaxId: 10090]
d1jgia2 : (ASP394) (THR450) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Amylosucrase |Neisseria polysaccharea [TaxId: 489]
d3jtga_ : (VAL302) (LYS356) [view usage] : a.4.5.21 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |ets domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1pp8m_ : (THR63) (SER108) [view usage] : a.4.5.44 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |39 kda initiator binding protein, IBP39, N-terminal domain |39 kda initiator binding protein, IBP39, N-terminal domain |Trichomonas vaginalis [TaxId: 5722]
d2yprb_ : (GLY73) (PHE128) [view usage] : a.4.5.21 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |ets domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1pp7u_ : (THR63) (SER108) [view usage] : a.4.5.44 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |39 kda initiator binding protein, IBP39, N-terminal domain |39 kda initiator binding protein, IBP39, N-terminal domain |Trichomonas vaginalis [TaxId: 5722]
d1fx2a_ : (GLY1061) (THR1105) [view usage] : d.58.29.1 |Ferredoxin-like |Nucleotide cyclase |Adenylyl and guanylyl cyclase catalytic domain |Receptor-type monomeric adenylyl cyclase |Trypanosome (Trypanosoma brucei), different isoform [TaxId: 5691]
d2md5a_ : (LYS362) (PHE415) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1r36a_ : (TRP361) (PHE414) [view usage] : a.4.5.21 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |ets domain |ETS-1 transcription factor, residues 331-440 |Mouse (Mus musculus) [TaxId: 10090]
d1duxc_ : (GLY32) (SER87) [view usage] : a.4.5.21 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |ets domain |Elk-1 |Human (Homo sapiens) [TaxId: 9606]
d1fbua_ : (ILE223) (ASN280) [view usage] : a.4.5.22 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Heat-shock transcription factor |Heat-shock transcription factor |Milk yeast (Kluyveromyces lactis) [TaxId: 28985]
d1ka8a_ : (GLY20) (GLU92) [view usage] : a.4.5.20 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |P4 origin-binding domain-like |P4 origin-binding domain |Bacteriophage P4 [TaxId: 10680]
d1awca_ : (GLY346) (CYS401) [view usage] : a.4.5.21 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |ets domain |GA binding protein (GABP) alpha |Mouse (Mus musculus) [TaxId: 10090]
d2jnwa1 : (SER100) (GLY133) [view usage] : c.52.1.20 |Restriction endonuclease-like |Restriction endonuclease-like |XPF/Rad1/Mus81 nuclease |DNA excision repair protein ERCC-1 |Human (Homo sapiens) [TaxId: 9606]
d3sxsa_ : (VAL442) (GLU490) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3r5ga_ : (GLY370) (ASP410) [view usage] : d.58.29.0 |Ferredoxin-like |Nucleotide cyclase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d4flqa1 : (ASP394) (GLY449) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Neisseria polysaccharea [TaxId: 489]
d3ueqa1 : (ASP394) (THR450) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Neisseria polysaccharea [TaxId: 489]
d1tnsa_ : (MET1) (ASN49) [view usage] : a.6.1.7 |Putative DNA-binding domain |Putative DNA-binding domain |Excisionase-like |mu transposase, DNA-binding domain |Bacteriophage Mu [TaxId: 10677]
d3hsfa_ : (GLU29) (ASN88) [view usage] : a.4.5.22 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Heat-shock transcription factor |Heat-shock transcription factor |Milk yeast (Kluyveromyces lactis) [TaxId: 28985]
d1rh6b_ : (MET1) (HIS44) [view usage] : a.6.1.7 |Putative DNA-binding domain |Putative DNA-binding domain |Excisionase-like |Excisionase Xis |Bacteriophage lambda [TaxId: 10710]
d2ypra_ : (GLY73) (PHE128) [view usage] : a.4.5.21 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |ets domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ggda_ : (LEU266) (SER308) [view usage] : d.68.2.2 |IF3-like |EPT/RTPC-like |Enolpyruvate transferase, EPT |5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase |Agrobacterium sp. [TaxId: 268951]
d2jnab_ : (THR240) (ASP293) [view usage] : d.230.6.1 |Dodecin subunit-like |YdgH-like |YdgH-like |Hypothetical protein STM0082 |Salmonella typhimurium [TaxId: 90371]
d1wwxa1 : (GLY37) (LYS91) [view usage] : a.4.5.21 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |ets domain |E74-like factor 5 ese-2b |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, d.68, d.58, d.144, c.52, a.4, a.6, d.230