Tableau information
Concept source: d3n1mb_ amino acid (a.a.) range (ARG149)(LYS191)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG149) (THR155) E1
(ASP159) (TYR163) H2
(TYR163) (GLY174) H3
(ASP176) (TYR180) E4
(HIS185) (LYS191) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 140.8° H2
H3 139.9° -42.8° H3
E4 -41.4° -134.2° -177.0° E4
E5 149.9° 35.2° -10.8° 166.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3daob_ : (ILE148) (ALA188) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Eubacterium rectale
d1x9za_ : (PRO487) (ALA525) [view usage] : d.292.1.1 |DNA mismatch repair protein MutL |DNA mismatch repair protein MutL |DNA mismatch repair protein MutL |DNA mismatch repair protein MutL |Escherichia coli [TaxId: 562]
d2fuea_ : (MSE135) (PRO193) [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ezvb2 : (ASP236) (GLN292) [view usage] : d.185.1.1 |LuxS/MPP-like metallohydrolase |LuxS/MPP-like metallohydrolase |MPP-like |Cytochrome bc1 core subunit 2 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2q66a2 : (ASP102) (PHE148) [view usage] : d.218.1.3 |Nucleotidyltransferase |Nucleotidyltransferase |Poly(A) polymerase, PAP, N-terminal domain |Poly(A) polymerase, PAP, N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2p7le_ : (HIS69) (TYR110) [view usage] : d.32.1.2 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Antibiotic resistance proteins |automated matches |Listeria monocytogenes [TaxId: 169963]
d2hhpa2 : (GLY98) (PHE148) [view usage] : d.218.1.3 |Nucleotidyltransferase |Nucleotidyltransferase |Poly(A) polymerase, PAP, N-terminal domain |Poly(A) polymerase, PAP, N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1x9zb_ : (LEU485) (ALA525) [view usage] : d.292.1.1 |DNA mismatch repair protein MutL |DNA mismatch repair protein MutL |DNA mismatch repair protein MutL |DNA mismatch repair protein MutL |Escherichia coli [TaxId: 562]
d3d1mb_ : (ARG145) (LYS187) [view usage] : d.65.1.2 |Hedgehog/DD-peptidase |Hedgehog/DD-peptidase |Hedgehog (development protein), N-terminal signaling domain |Sonic hedgehog |Mouse (Mus musculus) [TaxId: 10090]
d4kdda_ : (ARG63) (GLN104) [view usage] : d.67.3.1 |RRF/tRNA synthetase additional domain-like |Ribosome recycling factor, RRF |Ribosome recycling factor, RRF |Ribosome recycling factor, RRF |Mycobacterium tuberculosis [TaxId: 1773]
d1ckva_ : (THR37) (ASN82) [view usage] : d.137.1.1 |Monooxygenase (hydroxylase) regulatory protein |Monooxygenase (hydroxylase) regulatory protein |Monooxygenase (hydroxylase) regulatory protein |Soluble methane monooxygenase regulatory protein B |Escherichia coli [TaxId: 562]
d2b51a1 : (GLY95) (VAL148) [view usage] : d.218.1.10 |Nucleotidyltransferase |Nucleotidyltransferase |RNA editing terminal uridyl transferase 2, RET2, catalytic domain |RNA editing terminal uridyl transferase 2, TUTase 2, RET2 |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1isea_ : (ARG63) (LEU102) [view usage] : d.67.3.1 |RRF/tRNA synthetase additional domain-like |Ribosome recycling factor, RRF |Ribosome recycling factor, RRF |Ribosome recycling factor, RRF |Escherichia coli [TaxId: 562]
d1kyta_ : (ALA110) (MSE145) [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Phosphoglycolate phosphatase, PGPase |Thermoplasma acidophilum [TaxId: 2303]
d3mxwa_ : (ARG144) (LYS186) [view usage] : d.65.1.2 |Hedgehog/DD-peptidase |Hedgehog/DD-peptidase |Hedgehog (development protein), N-terminal signaling domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1vhha_ : (ARG145) (LYS187) [view usage] : d.65.1.2 |Hedgehog/DD-peptidase |Hedgehog/DD-peptidase |Hedgehog (development protein), N-terminal signaling domain |Sonic hedgehog |Mouse (Mus musculus) [TaxId: 10090]
d2omoe_ : (TYR2) (LYS57) [view usage] : d.58.4.11 |Ferredoxin-like |Dimeric alpha+beta barrel |PA3566-like |Hypothetical protein NE0621 |Nitrosomonas europaea [TaxId: 915]
d4kc6a_ : (ARG63) (VAL102) [view usage] : d.67.3.0 |RRF/tRNA synthetase additional domain-like |Ribosome recycling factor, RRF |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d2hf2b_ : (PHE147) (ILE187) [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |automated matches |Escherichia coli K-12 [TaxId: 83333]
d3n1fa_ : (ARG149) (LYS191) [view usage] : d.65.1.2 |Hedgehog/DD-peptidase |Hedgehog/DD-peptidase |Hedgehog (development protein), N-terminal signaling domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3mpob_ : (ALA153) (ASN191) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Lactobacillus brevis [TaxId: 387344]
d2gg4a_ : (GLY340) (GLY383) [view usage] : d.68.2.2 |IF3-like |EPT/RTPC-like |Enolpyruvate transferase, EPT |5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase |Agrobacterium sp. [TaxId: 268951]
d1l6ra_ : (ALA110) (ASN146) [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Phosphoglycolate phosphatase, PGPase |Thermoplasma acidophilum [TaxId: 2303]
d1fa0a4 : (ASP102) (LYS147) [view usage] : d.218.1.3 |Nucleotidyltransferase |Nucleotidyltransferase |Poly(A) polymerase, PAP, N-terminal domain |Poly(A) polymerase, PAP, N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2kyqa_ : (CYS3) (TYR54) [view usage] : g.3.7.5 |Knottins (small inhibitors, toxins, lectins) |Scorpion toxin-like |Plant defensins |automated matches |J'oublie (Pentadiplandra brazzeana) [TaxId: 43545]
d1wrua2 : (PRO139) (SER175) [view usage] : b.106.1.1 |Phage tail proteins |Phage tail proteins |Baseplate protein-like |Baseplate protein gpP |Bacteriophage Mu [TaxId: 10677]
d3pt9a3 : (ARG1264) (ALA1322) [view usage] : c.66.1.26 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |C5 cytosine-specific DNA methylase, DCM |Methyltransferase domain from DNA methyltransferase 1 (DNMT1) |Mouse (Mus musculus) [TaxId: 10090]
d2ftra1 : (ASN5) (TYR66) [view usage] : d.58.4.15 |Ferredoxin-like |Dimeric alpha+beta barrel |EthD-like |Hypothetical protein BH0200 |Bacillus halodurans [TaxId: 86665]
d3n1mb_ : (ARG149) (LYS191) [view usage] : d.65.1.2 |Hedgehog/DD-peptidase |Hedgehog/DD-peptidase |Hedgehog (development protein), N-terminal signaling domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ge9a_ : (GLN67) (LEU104) [view usage] : d.67.3.1 |RRF/tRNA synthetase additional domain-like |Ribosome recycling factor, RRF |Ribosome recycling factor, RRF |Ribosome recycling factor, RRF |Aquifex aeolicus [TaxId: 63363]
d1ek8a_ : (ARG63) (LEU102) [view usage] : d.67.3.1 |RRF/tRNA synthetase additional domain-like |Ribosome recycling factor, RRF |Ribosome recycling factor, RRF |Ribosome recycling factor, RRF |Escherichia coli [TaxId: 562]
d2cdqa2 : (THR342) (THR385) [view usage] : d.58.18.10 |Ferredoxin-like |ACT-like |Aspartokinase allosteric domain-like |Aspartokinase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
d.68, d.58, c.108, c.66, d.185, d.32, d.67, d.137, d.65, d.218, b.106, g.3, d.292