Tableau information
Concept source: d2df8b_ amino acid (a.a.) range (GLN188)(ASP234)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHEHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLN188) (SER195) E1
(LEU198) (ILE214) H2
(TRP216) (TYR220) E3
(THR222) (GLY228) H4
(GLY228) (ASP234) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 161.1° H2
E3 -16.5° -175.5° E3
H4 130.5° -63.6° 116.3° H4
H5 -143.1° 39.4° -144.8° -80.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3gkxa_ : (THR3) (ALA45) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Bacteroides fragilis [TaxId: 272559]
d1nuia1 : (LYS151) (ASP197) [view usage] : e.13.1.2 |DNA primase core |DNA primase core |Primase fragment of primase-helicase protein |Primase fragment of primase-helicase protein |Bacteriophage T7 [TaxId: 10760]
d2reqa1 : (PRO83) (GLY140) [view usage] : c.1.19.1 |TIM beta/alpha-barrel |Cobalamin (vitamin B12)-dependent enzymes |Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain |Methylmalonyl-CoA mutase alpha subunit, domain 1 |Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
d1u0ea_ : (THR334) (GLN396) [view usage] : c.80.1.2 |SIS domain |SIS domain |Phosphoglucose isomerase, PGI |Phosphoglucose isomerase, PGI |Mouse (Mus musculus) [TaxId: 10090]
d3nzeb_ : (ASP134) (MSE203) [view usage] : c.124.1.0 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |automated matches |automated matches |Arthrobacter aurescens [TaxId: 290340]
d1woga_ : (VAL174) (LEU218) [view usage] : c.42.1.1 |Arginase/deacetylase |Arginase/deacetylase |Arginase-like amidino hydrolases |Agmatinase |Deinococcus radiodurans [TaxId: 1299]
d4c7va3 : (GLY553) (PRO603) [view usage] : c.48.1.0 |TK C-terminal domain-like |TK C-terminal domain-like |automated matches |automated matches |Lactobacillus salivarius [TaxId: 362948]
d1vdda_ : (ARG80) (VAL131) [view usage] : e.49.1.1 |Recombination protein RecR |Recombination protein RecR |Recombination protein RecR |Recombination protein RecR |Deinococcus radiodurans [TaxId: 1299]
d1zi9a_ : (HIS161) (SER233) [view usage] : c.69.1.9 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Dienelactone hydrolase |automated matches |Pseudomonas putida [TaxId: 303]
d1t9ba1 : (GLY402) (ILE438) [view usage] : c.31.1.3 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |Pyruvate oxidase and decarboxylase, middle domain |Acetohydroxyacid synthase catalytic subunit |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2df8b_ : (GLN188) (ASP234) [view usage] : c.80.1.0 |SIS domain |SIS domain |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 70601]
d3vmka_ : (GLN4) (ALA66) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |3-isopropylmalate dehydrogenase, IPMDH |Shewanella benthica [TaxId: 43661]
d3vmla_ : (GLN4) (ALA66) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Shewanella oneidensis [TaxId: 211586]
d1dwua_ : (PRO58) (HIS102) [view usage] : e.24.1.1 |Ribosomal protein L1 |Ribosomal protein L1 |Ribosomal protein L1 |Ribosomal protein L1 |Methanococcus thermolithotrophicus [TaxId: 2186]
d3i6ya_ : (PRO215) (ALA279) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Oleispira antarctica [TaxId: 188908]
d3g68b_ : (GLU209) (ILE253) [view usage] : c.80.1.0 |SIS domain |SIS domain |automated matches |automated matches |Clostridium difficile [TaxId: 272563]
d3pzsa_ : (LYS2) (CYS75) [view usage] : c.72.1.5 |Ribokinase-like |Ribokinase-like |PfkB-like kinase |automated matches |Yersinia pestis [TaxId: 214092]
d1i3cb_ : (LYS9) (SER59) [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |Response regulator for cyanobacterial phytochrome |Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]
d1p4ra1 : (GLN5) (THR55) [view usage] : c.24.1.3 |Methylglyoxal synthase-like |Methylglyoxal synthase-like |Inosicase |IMP cyclohydrolase domain of bifunctional purine biosynthesis enzyme ATIC |Human (Homo sapiens) [TaxId: 9606]
d3pkza_ : (ILE2) (PHE52) [view usage] : c.53.1.0 |Resolvase-like |Resolvase-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d3pzsb_ : (LYS2) (CYS75) [view usage] : c.72.1.5 |Ribokinase-like |Ribokinase-like |PfkB-like kinase |automated matches |Yersinia pestis [TaxId: 214092]
d1k66a_ : (GLN7) (PRO61) [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |Response regulator for cyanobacterial phytochrome |Calothrix sp. pcc 7601, RcpB [TaxId: 1188]
d2j6ha1 : (HIS465) (ILE510) [view usage] : c.80.1.1 |SIS domain |SIS domain |double-SIS domain |automated matches |Escherichia coli [TaxId: 562]
d1p90a_ : (GLN167) (VAL221) [view usage] : c.55.5.2 |Ribonuclease H-like motif |Nitrogenase accessory factor-like |Nitrogenase accessory factor |NafY core domain |Azotobacter vinelandii [TaxId: 354]
d2cb0b_ : (GLN188) (ASP234) [view usage] : c.80.1.0 |SIS domain |SIS domain |automated matches |automated matches |Pyrococcus furiosus [TaxId: 2261]
d2btqa1 : (ARG67) (CYS131) [view usage] : c.32.1.1 |Tubulin nucleotide-binding domain-like |Tubulin nucleotide-binding domain-like |Tubulin, GTPase domain |Tubulin alpha-subunit |Prosthecobacter dejongeii [TaxId: 48465]
d1n0hb1 : (GLY402) (ILE438) [view usage] : c.31.1.3 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |Pyruvate oxidase and decarboxylase, middle domain |Acetohydroxyacid synthase catalytic subunit |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2cb0a_ : (GLN188) (ASP234) [view usage] : c.80.1.0 |SIS domain |SIS domain |automated matches |automated matches |Pyrococcus furiosus [TaxId: 2261]
d2okgb_ : (ALA174) (ALA234) [view usage] : c.124.1.8 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |SorC sugar-binding domain-like |Central glycolytic gene regulator CggR |Bacillus subtilis [TaxId: 1423]
d1mjga_ : (VAL276) (THR343) [view usage] : e.26.1.2 |Prismane protein-like |Prismane protein-like |Carbon monoxide dehydrogenase |Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH) subunit |Moorella thermoacetica [TaxId: 1525]
d3hyla3 : (VAL555) (PRO605) [view usage] : c.48.1.0 |TK C-terminal domain-like |TK C-terminal domain-like |automated matches |automated matches |Bacillus anthracis [TaxId: 261594]
d1t9ab1 : (GLY402) (ILE438) [view usage] : c.31.1.3 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |Pyruvate oxidase and decarboxylase, middle domain |Acetohydroxyacid synthase catalytic subunit |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1rtta_ : (ALA111) (LEU180) [view usage] : c.23.5.4 |Flavodoxin-like |Flavoproteins |NADPH-dependent FMN reductase |Hypothetical protein PA1204 |Pseudomonas aeruginosa [TaxId: 287]
d1ay0a3 : (ILE557) (LEU606) [view usage] : c.48.1.1 |TK C-terminal domain-like |TK C-terminal domain-like |Transketolase C-terminal domain-like |Transketolase (TK), C-domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2deca_ : (GLN188) (ALA233) [view usage] : c.80.1.0 |SIS domain |SIS domain |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 70601]
d1j1wa_ : (ILE6) (THR75) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |NADP-dependent isocitrate dehydrogenase |Pig (Sus scrofa) [TaxId: 9823]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.69, c.80, c.77, c.124, c.42, c.72, c.23, c.47, c.55, c.32, c.31, c.53, e.13, c.24, c.48, e.26, e.24, e.49