Protein Concepts Dictionary

Tableau information

Concept source:  d3zo8a_  amino acid (a.a.) range (ARG4)(LEU65)

nSSEs in this Concept: 5

String of secondary struct.elems. (SSEs) defining this concept: EHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (ARG4)   (ARG14) E1
	   (THR16)   (HIS36) H2
	   (GLN44)   (THR50) E3
	   (THR50)   (VAL56) H4
	   (ALA59)   (LEU65) H5

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                 
H2      149.4°   H2                          
E3      -33.2°  136.9°   E3                   
H4       80.0° -103.9°  112.4°   H4            
H5      110.0°  -57.2°  137.3°   50.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1xhoa_ :     (TRP3)   (GLY65)   [view usage] : d.79.1.2 |Bacillus chorismate mutase-like |YjgF-like |Chorismate mutase |Chorismate mutase |Clostridium thermocellum [TaxId: 1515]
 d2afin_ :     (GLN4)   (HIS50)   [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Nitrogenase iron protein |Azotobacter vinelandii [TaxId: 354]
 d1dbfa_ :     (MET2)   (GLU64)   [view usage] : d.79.1.2 |Bacillus chorismate mutase-like |YjgF-like |Chorismate mutase |Chorismate mutase |Bacillus subtilis [TaxId: 1423]
 d3zo8a_ :     (ARG4)   (LEU65)   [view usage] : d.79.1.2 |Bacillus chorismate mutase-like |YjgF-like |Chorismate mutase |Chorismate mutase |Bacillus subtilis [TaxId: 1423]
 d1odeb_ :     (MET1)   (GLY66)   [view usage] : d.79.1.2 |Bacillus chorismate mutase-like |YjgF-like |Chorismate mutase |Chorismate mutase |Thermus thermophilus [TaxId: 274]
 d1comk_ :     (MET2)   (ARG63)   [view usage] : d.79.1.2 |Bacillus chorismate mutase-like |YjgF-like |Chorismate mutase |Chorismate mutase |Bacillus subtilis [TaxId: 1423]
 d1xhoc_ :     (TRP3)   (GLY65)   [view usage] : d.79.1.2 |Bacillus chorismate mutase-like |YjgF-like |Chorismate mutase |Chorismate mutase |Clostridium thermocellum [TaxId: 1515]
 d1a6fa_ :    (GLU43)  (SER111)   [view usage] : d.14.1.2 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |RNase P protein |RNase P protein |Bacillus subtilis [TaxId: 1423]
 d1comc_ :     (MET2)   (ARG63)   [view usage] : d.79.1.2 |Bacillus chorismate mutase-like |YjgF-like |Chorismate mutase |Chorismate mutase |Bacillus subtilis [TaxId: 1423]
 d1comb_ :     (MET2)   (ARG63)   [view usage] : d.79.1.2 |Bacillus chorismate mutase-like |YjgF-like |Chorismate mutase |Chorismate mutase |Bacillus subtilis [TaxId: 1423]
 d1comf_ :     (MET2)   (LEU65)   [view usage] : d.79.1.2 |Bacillus chorismate mutase-like |YjgF-like |Chorismate mutase |Chorismate mutase |Bacillus subtilis [TaxId: 1423]
 d1odea_ :     (MET1)   (GLY66)   [view usage] : d.79.1.2 |Bacillus chorismate mutase-like |YjgF-like |Chorismate mutase |Chorismate mutase |Thermus thermophilus [TaxId: 274]
 d1coma_ :     (MET2)   (LEU65)   [view usage] : d.79.1.2 |Bacillus chorismate mutase-like |YjgF-like |Chorismate mutase |Chorismate mutase |Bacillus subtilis [TaxId: 1423]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.37,    d.14,    d.79