Tableau information
Concept source: d1jx7a_ amino acid (a.a.) range (LYS3)(ASN72)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHEHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS3) (ASN9) E1
(SER17) (GLU32) H2
(ASP36) (LEU41) E3
(ASP44) (LEU50) H4
(ILE61) (ASN72) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -165.3° H2
E3 -12.7° -170.6° E3
H4 100.2° -66.3° -105.8° H4
H5 -156.3° 32.2° -144.5° -80.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2d1pe_ : (ARG3) (TYR71) [view usage] : c.114.1.1 |DsrEFH-like |DsrEFH-like |DsrEF-like |tRNA 2-thiouridine synthesizing protein C, TusC |Escherichia coli [TaxId: 562]
d1jx7a_ : (LYS3) (ASN72) [view usage] : c.114.1.1 |DsrEFH-like |DsrEFH-like |DsrEF-like |Hypothetical protein YchN |Escherichia coli [TaxId: 562]
d1ud3a2 : (ALA320) (ARG388) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Bacterial alpha-amylase |Bacillus sp., ksm-k38 [TaxId: 1409]
d1zzoa1 : (PRO71) (PHE127) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Lipoprotein DsbF |Mycobacterium tuberculosis [TaxId: 1773]
d4fila_ : (ARG49) (PHE85) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d2hy5b1 : (LYS207) (GLU276) [view usage] : c.114.1.1 |DsrEFH-like |DsrEFH-like |DsrEF-like |Intracellular sulfur oxidation protein DsrF |Chromatium vinosum [TaxId: 1049]
d2q01b_ : (ARG352) (GLY406) [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Caulobacter vibrioides [TaxId: 190650]
d3eiwa_ : (ARG56) (ILE95) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Staphylococcus aureus [TaxId: 158879]
d1yuba_ : (GLN93) (HIS146) [view usage] : c.66.1.24 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |rRNA adenine dimethylase-like |rRNA adenine dimethylase |Streptococcus pneumoniae, Ermam [TaxId: 1313]
d4dalb_ : (ALA251) (ILE307) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d1vhvb_ : (LYS130) (LEU186) [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Diphthine synthase, DphB |Archaeoglobus fulgidus [TaxId: 2234]
d1ltkb_ : (ASN336) (SER389) [view usage] : c.86.1.1 |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d2fg6c2 : (PRO167) (GLY215) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Transcarbamylase-like protein |Bacteroides fragilis [TaxId: 817]
d1svla_ : (LYS446) (GLY503) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Papillomavirus large T antigen helicase domain |Simian virus 40 [TaxId: 10633]
d3lhsa_ : (ARG56) (ILE95) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Staphylococcus aureus [TaxId: 426430]
d2hy5c1 : (SER402) (LEU454) [view usage] : c.114.1.2 |DsrEFH-like |DsrEFH-like |DsrH-like |DsrH |Chromatium vinosum [TaxId: 1049]
d2d1pd_ : (ARG2) (GLY72) [view usage] : c.114.1.1 |DsrEFH-like |DsrEFH-like |DsrEF-like |tRNA 2-thiouridine synthesizing protein D, TusD |Escherichia coli [TaxId: 562]
d3h53a1 : (ASP252) (GLN307) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1tued_ : (ALA504) (GLY549) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Replication protein E1 helicase domain |Human papillomavirus type 18 [TaxId: 333761]
d2d1pb1 : (ARG3) (ASP72) [view usage] : c.114.1.1 |DsrEFH-like |DsrEFH-like |DsrEF-like |tRNA 2-thiouridine synthesizing protein C, TusC |Escherichia coli [TaxId: 562]
d3rmtc_ : (SER88) (GLY138) [view usage] : d.68.2.0 |IF3-like |EPT/RTPC-like |automated matches |automated matches |Bacillus halodurans [TaxId: 86665]
d1ktba2 : (ASP236) (GLN291) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Melibiase |Chicken (Gallus gallus) [TaxId: 9031]
d3pzsa_ : (ALA77) (SER139) [view usage] : c.72.1.5 |Ribokinase-like |Ribokinase-like |PfkB-like kinase |automated matches |Yersinia pestis [TaxId: 214092]
d1tuef_ : (ALA504) (GLY549) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Replication protein E1 helicase domain |Human papillomavirus type 18 [TaxId: 333761]
d2hy5a1 : (ALA4) (TYR71) [view usage] : c.114.1.1 |DsrEFH-like |DsrEFH-like |DsrEF-like |Sulfurtransferase DsrE |Chromatium vinosum [TaxId: 1049]
d2d1pa1 : (ARG2) (GLY72) [view usage] : c.114.1.1 |DsrEFH-like |DsrEFH-like |DsrEF-like |tRNA 2-thiouridine synthesizing protein D, TusD |Escherichia coli [TaxId: 562]
d3eixa_ : (ARG56) (ILE95) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Staphylococcus aureus [TaxId: 158879]
d1v4vb_ : (LYS6) (GLY56) [view usage] : c.87.1.3 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-N-acetylglucosamine 2-epimerase |UDP-N-acetylglucosamine 2-epimerase |Thermus thermophilus [TaxId: 274]
d1l1sa_ : (ARG5) (GLY66) [view usage] : c.114.1.1 |DsrEFH-like |DsrEFH-like |DsrEF-like |Hypothetical protein MTH1491 |Methanobacterium thermoautotrophicum [TaxId: 145262]
d3pzsb_ : (ALA77) (SER139) [view usage] : c.72.1.5 |Ribokinase-like |Ribokinase-like |PfkB-like kinase |automated matches |Yersinia pestis [TaxId: 214092]
d2nrca2 : (GLU45) (GLY90) [view usage] : c.124.1.2 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase alpha subunit-like |Succinate:CoA transferase, N-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d3kd6b_ : (LYS119) (VAL167) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Chlorobaculum tepidum [TaxId: 1097]
d3kd6a_ : (LYS119) (VAL167) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Chlorobaculum tepidum [TaxId: 1097]
d1e1da_ : (GLY238) (TYR281) [view usage] : e.26.1.1 |Prismane protein-like |Prismane protein-like |Hybrid cluster protein (prismane protein) |Hybrid cluster protein (prismane protein) |Desulfovibrio vulgaris [TaxId: 881]
d1gnta_ : (GLY238) (TYR281) [view usage] : e.26.1.1 |Prismane protein-like |Prismane protein-like |Hybrid cluster protein (prismane protein) |Hybrid cluster protein (prismane protein) |Desulfovibrio vulgaris [TaxId: 881]
d3zqaa_ : (LYS256) (ILE313) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1js1y2 : (PRO167) (GLY215) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Transcarbamylase-like protein |Bacteroides fragilis [TaxId: 817]
d3lx9a1 : (ASP266) (GLN321) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Melibiase |Human (Homo sapiens) [TaxId: 9606]
d3i6ea2 : (PRO139) (PHE193) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Ruegeria pomeroyi [TaxId: 89184]
d2cc0b_ : (ASP125) (GLY176) [view usage] : c.6.2.3 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |NodB-like polysaccharide deacetylase |automated matches |Streptomyces lividans [TaxId: 1916]
d2d1pc1 : (MET1) (ALA50) [view usage] : c.114.1.2 |DsrEFH-like |DsrEFH-like |DsrH-like |tRNA 2-thiouridine synthesizing protein B, TusB |Escherichia coli [TaxId: 562]
d3b4ub_ : (ASP135) (LEU188) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d3hg3a1 : (ASP266) (GLN321) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Melibiase |Human (Homo sapiens) [TaxId: 9606]
d1td2a_ : (ASP77) (SER140) [view usage] : c.72.1.5 |Ribokinase-like |Ribokinase-like |PfkB-like kinase |Pyridoxamine kinase |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, d.68, c.6, c.90, c.82, c.92, c.66, c.124, c.72, c.37, c.47, c.86, c.87, c.78, e.26, c.114