Tableau information
Concept source: d2ddsa_ amino acid (a.a.) range (VAL145)(LEU218)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHEHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL145) (ASP156) E1
(PRO164) (LYS182) H2
(TYR189) (ASP195) E3
(LYS200) (ASN206) H4
(SER209) (LEU218) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 163.2° H2
E3 -26.5° 157.0° E3
H4 108.6° -67.6° 134.2° H4
H5 143.7° -19.6° 145.7° -69.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1rhca_ : (LEU170) (GLY216) [view usage] : c.1.16.3 |TIM beta/alpha-barrel |Bacterial luciferase-like |F420 dependent oxidoreductases |Coenzyme F420 dependent secondary alcohol dehydrogenase |Methanoculleus thermophilicus [TaxId: 2200]
d4lrqc_ : (MET1) (GLY61) [view usage] : c.44.1.0 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |automated matches |automated matches |Vibrio cholerae [TaxId: 345073]
d1kbla1 : (VAL700) (GLU758) [view usage] : c.1.12.2 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Pyruvate phosphate dikinase, C-terminal domain |Pyruvate phosphate dikinase, C-terminal domain |Clostridium symbiosum [TaxId: 1512]
d3op1a1 : (VAL20) (GLY89) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d4hcda2 : (ASP129) (ALA196) [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d4lrqb_ : (MET1) (GLY61) [view usage] : c.44.1.0 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |automated matches |automated matches |Vibrio cholerae [TaxId: 345073]
d2z1ma_ : (LYS4) (GLY49) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Aquifex aeolicus [TaxId: 224324]
d2j62a2 : (GLY183) (ASN249) [view usage] : c.1.8.10 |TIM beta/alpha-barrel |(Trans)glycosidases |alpha-D-glucuronidase/Hyaluronidase catalytic domain |Hyaluronidase catalytic domain |Clostridium perfringens [TaxId: 1502]
d3op1b1 : (SER19) (GLY89) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d4lrqd_ : (MET1) (GLY61) [view usage] : c.44.1.0 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |automated matches |automated matches |Vibrio cholerae [TaxId: 345073]
d2fk6a1 : (PRO199) (ARG261) [view usage] : d.157.1.7 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |RNase Z-like |Ribonuclease Z (RNase Z) |Bacillus subtilis [TaxId: 1423]
d1acoa2 : (ARG68) (LYS133) [view usage] : c.83.1.1 |Aconitase iron-sulfur domain |Aconitase iron-sulfur domain |Aconitase iron-sulfur domain |Aconitase A, N-terminal domain |Cow (Bos taurus) [TaxId: 9913]
d1dika1 : (VAL700) (GLU758) [view usage] : c.1.12.2 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Pyruvate phosphate dikinase, C-terminal domain |Pyruvate phosphate dikinase, C-terminal domain |Clostridium symbiosum [TaxId: 1512]
d1hfbg_ : (VAL69) (GLY152) [view usage] : c.1.10.4 |TIM beta/alpha-barrel |Aldolase |Class I DAHP synthetase |3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) |Baker's yeast (Saccharomyces cerevisiae), tyrosine-regulated isozyme [TaxId: 4932]
d1hp1a2 : (ASP29) (GLY108) [view usage] : d.159.1.2 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain |5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain |Escherichia coli [TaxId: 562]
d3n0xa_ : (LYS217) (LEU261) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 1076]
d2o55a_ : (ILE7) (GLN107) [view usage] : c.1.18.0 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |automated matches |automated matches |Red algae (Galdieria sulphuraria) [TaxId: 130081]
d1b0ja2 : (ARG68) (LYS133) [view usage] : c.83.1.1 |Aconitase iron-sulfur domain |Aconitase iron-sulfur domain |Aconitase iron-sulfur domain |Aconitase A, N-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d1kbpa2 : (VAL126) (PHE185) [view usage] : d.159.1.1 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Purple acid phosphatase-like |Plant purple acid phosphatase, catalytic domain |French bean (Phaseolus vulgaris) [TaxId: 3885]
d1u5va_ : (THR86) (ALA126) [view usage] : c.1.12.5 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |HpcH/HpaI aldolase |Citrate lyase, beta subunit |Mycobacterium tuberculosis [TaxId: 1773]
d4f8xa_ : (ILE230) (ALA303) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Penicillium canescens [TaxId: 5083]
d1xrsa_ : (LEU153) (VAL227) [view usage] : c.1.19.4 |TIM beta/alpha-barrel |Cobalamin (vitamin B12)-dependent enzymes |D-lysine 5,6-aminomutase alpha subunit, KamD |D-lysine 5,6-aminomutase alpha subunit, KamD |Clostridium sticklandii [TaxId: 1511]
d1vpaa_ : (MET1) (ARG63) [view usage] : c.68.1.13 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Cytidylytransferase |4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) |Thermotoga maritima [TaxId: 2336]
d3nv8b_ : (PHE80) (SER189) [view usage] : c.1.10.8 |TIM beta/alpha-barrel |Aldolase |Class-II DAHP synthetase |Probable DAHP synthetase AroG, phenylalanine-repressible |Mycobacterium tuberculosis [TaxId: 1773]
d3p8ka_ : (LYS2) (LYS73) [view usage] : d.160.1.0 |Carbon-nitrogen hydrolase |Carbon-nitrogen hydrolase |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]
d3cxqa_ : (GLU120) (PHE168) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1mrza2 : (VAL2) (ALA67) [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |FMN adenylyltransferase domain of bifunctional FAD synthetase |Thermotoga maritima [TaxId: 2336]
d4hpga_ : (ARG87) (ARG170) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Rubber tree (Hevea brasiliensis) [TaxId: 3981]
d1vbga1 : (GLY701) (GLU763) [view usage] : c.1.12.2 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Pyruvate phosphate dikinase, C-terminal domain |Pyruvate phosphate dikinase, C-terminal domain |Maize (Zea mays) [TaxId: 4577]
d1oi8a2 : (ASP29) (GLY108) [view usage] : d.159.1.2 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain |5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain |Escherichia coli [TaxId: 562]
d3nv8a_ : (PHE80) (SER189) [view usage] : c.1.10.8 |TIM beta/alpha-barrel |Aldolase |Class-II DAHP synthetase |Probable DAHP synthetase AroG, phenylalanine-repressible |Mycobacterium tuberculosis [TaxId: 1773]
d4lrqa_ : (GLN2) (GLY61) [view usage] : c.44.1.0 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |automated matches |automated matches |Vibrio cholerae [TaxId: 345073]
d2cc0a1 : (GLY5) (GLY56) [view usage] : c.6.2.3 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |NodB-like polysaccharide deacetylase |Acetyl-xylan esterase |Streptomyces lividans [TaxId: 1916]
d2i1la2 : (VAL2) (ALA67) [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |FMN adenylyltransferase domain of bifunctional FAD synthetase |Thermotoga maritima [TaxId: 2336]
d1rvka1 : (ASP129) (ALA196) [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |Hypothetical protein Atu3453 |Agrobacterium tumefaciens [TaxId: 358]
d3pz9a_ : (ILE40) (LEU122) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Thermotoga petrophila [TaxId: 390874]
d3pz9a_ : (ALA192) (ILE269) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Thermotoga petrophila [TaxId: 390874]
d2cc0b_ : (GLY5) (GLY56) [view usage] : c.6.2.3 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |NodB-like polysaccharide deacetylase |automated matches |Streptomyces lividans [TaxId: 1916]
d1ho5a2 : (LYS30) (GLY108) [view usage] : d.159.1.2 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain |5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain |Escherichia coli [TaxId: 562]
d2e11a_ : (ARG5) (GLY76) [view usage] : d.160.1.0 |Carbon-nitrogen hydrolase |Carbon-nitrogen hydrolase |automated matches |automated matches |Xanthomonas campestris pv. campestris [TaxId: 340]
d2uyrx_ : (ASP142) (LEU218) [view usage] : d.151.1.3 |DNase I-like |DNase I-like |Sphingomyelin phosphodiesterase-like |automated matches |Bacillus cereus [TaxId: 1396]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.2, d.159, c.6, c.68, c.26, d.157, c.93, d.151, d.160, d.108, c.44, c.83