Protein Concepts Dictionary

Tableau information

Concept source:  d2xuah_  amino acid (a.a.) range (SER66)(ASN124)

nSSEs in this Concept: 5

String of secondary struct.elems. (SSEs) defining this concept: EHEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (SER66)   (LYS70) E1
	   (ILE75)   (LYS90) H2
	   (ASN95)  (SER100) E3
	  (SER100)  (ARG112) H4
	  (GLU118)  (ASN124) E5

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                 
H2      139.0°   H2                          
E3      -58.0°  149.0°   E3                   
H4       77.9°  -73.4° -134.6°   H4            
E5      -74.6°  138.5°  -17.1° -148.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.9°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1weka_ :   (THR113)  (LEU167)   [view usage] : c.129.1.1 |MCP/YpsA-like |MCP/YpsA-like |MoCo carrier protein-like |Hypothetical protein TT1465 (TTHA1644) |Thermus thermophilus [TaxId: 274]
 d3hn6b_ :     (MET1)   (MET71)   [view usage] : c.124.1.0 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |automated matches |automated matches |Borrelia burgdorferi [TaxId: 224326]
 d1ymfa1 :   (VAL261)  (THR320)   [view usage] : c.37.1.14 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RNA helicase |YFV helicase domain |Yellow fever virus [TaxId: 11089]
 d4nmwa_ :    (THR41)  (ALA106)   [view usage] : c.69.1.26 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Biotin biosynthesis protein BioH |automated matches |Salmonella enterica [TaxId: 99287]
 d1dhja_ :    (ARG71)  (ASP116)   [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductase, prokaryotic type |Escherichia coli [TaxId: 562]
 d1mdba_ :   (GLY251)  (GLY306)   [view usage] : e.23.1.1 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |Dihydroxybenzoate-AMP ligase DhbE |Bacillus subtilis [TaxId: 1423]
 d2xuah_ :    (SER66)  (ASN124)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Burkholderia xenovorans [TaxId: 266265]
 d4g8zx_ :    (ALA91)  (LYS148)   [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |automated matches |Pneumocystis jirovecii [TaxId: 42068]
 d3hn6a_ :     (MET1)   (MET71)   [view usage] : c.124.1.0 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |automated matches |automated matches |Borrelia burgdorferi [TaxId: 224326]
 d3puha1 :    (TYR67)  (MET141)   [view usage] : c.69.1.21 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |PepX catalytic domain-like |automated matches |Rhodococcus sp. [TaxId: 104109]
 d3qyjb_ :    (SER65)  (ASP128)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Nostoc sp. [TaxId: 103690]
 d1klka_ :    (ILE92)  (TYR147)   [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductases, eukaryotic type |Fungus (Pneumocystis carinii) [TaxId: 4754]
 d3nrra1 :    (CYS98)  (ASN147)   [view usage] : c.71.1.0 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |automated matches |automated matches |Babesia bovis [TaxId: 5865]
 d1p99a_ :   (LYS185)  (ASN229)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Putative lipoprotein (NlpA family) |Staphylococcus aureus [TaxId: 1280]
 d4ixgx_ :    (GLY91)  (LYS148)   [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductases, eukaryotic type |Fungus (Pneumocystis carinii) [TaxId: 4754]
 d3gxaa_ :   (LYS191)  (PHE234)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Neisseria meningitidis [TaxId: 487]
 d1mt3a_ :    (ARG68)  (GLY129)   [view usage] : c.69.1.7 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Proline iminopeptidase-like |Tricorn interacting factor F1 |Thermoplasma acidophilum [TaxId: 2303]
 d1ddra_ :    (VAL72)  (ASP116)   [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductase, prokaryotic type |Escherichia coli [TaxId: 562]
 d2xuaa_ :    (SER66)  (ASN124)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Burkholderia xenovorans [TaxId: 266265]
 d3kxpa_ :    (SER72)  (ASP130)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Mesorhizobium loti [TaxId: 381]
 d1brta_ :    (SER64)  (ALA123)   [view usage] : c.69.1.12 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloperoxidase |Bromoperoxidase A2 |Streptomyces aureofaciens [TaxId: 1894]
 d2an9a_ :     (LEU6)   (ASN58)   [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Guanylate kinase |Escherichia coli [TaxId: 562]
 d1cpja_ :   (THR149)  (HIS190)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin B |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1dyra_ :    (ILE92)  (LYS148)   [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductases, eukaryotic type |Fungus (Pneumocystis carinii) [TaxId: 4754]
 d1lk9b_ :   (TYR125)  (GLY184)   [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Alliinase |Garlic (Allium sativum) [TaxId: 4682]
 d4kaca_ :    (SER83)  (GLU141)   [view usage] : c.69.1.8 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloalkane dehalogenase |automated matches |Rhodococcus sp. [TaxId: 1831]
 d4h95a_ :     (VAL6)   (SER78)   [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductases, eukaryotic type |Yeast (Candida albicans) [TaxId: 5476]
 d3kjra1 :    (CYS98)  (LYS148)   [view usage] : c.71.1.0 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |automated matches |automated matches |Babesia bovis [TaxId: 484906]
 d1wekb_ :   (THR113)  (ASP169)   [view usage] : c.129.1.1 |MCP/YpsA-like |MCP/YpsA-like |MoCo carrier protein-like |Hypothetical protein TT1465 (TTHA1644) |Thermus thermophilus [TaxId: 274]
 d1keza_ :    (ALA96)  (ASP169)   [view usage] : c.69.1.22 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Thioesterase domain of polypeptide, polyketide and fatty acid synthases |Erythromycin polyketide synthase |Saccharopolyspora erythraea [TaxId: 1836]
 d1qzfa1 :    (ASN87)  (LEU138)   [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Bifunctional enzyme dihydrofolate reductase-thymidylate synthase, DFR domain |Cryptosporidium hominis [TaxId: 237895]
 d3foba_ :    (SER65)  (GLY124)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Bacillus anthracis [TaxId: 198094]
 d2okgb_ :   (LYS108)  (PRO173)   [view usage] : c.124.1.8 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |SorC sugar-binding domain-like |Central glycolytic gene regulator CggR |Bacillus subtilis [TaxId: 1423]
 d1iupa_ :    (THR68)  (GLY127)   [view usage] : c.69.1.10 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carbon-carbon bond hydrolase |Meta-cleavage product hydrolase CumD |Pseudomonas fluorescens [TaxId: 294]
 d1md9a_ :   (GLY251)  (GLY306)   [view usage] : e.23.1.1 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |Dihydroxybenzoate-AMP ligase DhbE |Bacillus subtilis [TaxId: 1423]
 d3om8b_ :    (SER65)  (ASN123)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
 d4gota_ :   (GLU179)  (LYS225)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
 d3q1ha_ :    (ARG72)  (ALA118)   [view usage] : c.71.1.0 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |automated matches |automated matches |Yersinia pestis [TaxId: 214092]
 d3puhb1 :    (TYR67)  (MET141)   [view usage] : c.69.1.21 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |PepX catalytic domain-like |automated matches |Rhodococcus sp. [TaxId: 104109]
 d2xmza_ :    (GLU53)  (SER113)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
 d3om8a_ :    (SER65)  (ASN123)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
 d1cd2a_ :    (GLY91)  (TYR147)   [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductases, eukaryotic type |Fungus (Pneumocystis carinii) [TaxId: 4754]
 d2psfa_ :    (LYS83)  (GLU144)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Renilla reniformis [TaxId: 6136]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.67,    c.69,    c.94,   c.124,    c.37,     d.3,    c.71,    e.23,   c.129