Tableau information
Concept source: d3ozmh2 amino acid (a.a.) range (ASP272)(ASP331)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP272) (ASP277) E1
(GLY283) (HIS298) H2
(ALA300) (PHE306) E3
(ILE310) (SER322) H4
(PRO325) (ASP331) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -172.7° H2
E3 -34.1° 148.0° E3
H4 138.9° -36.4° -165.8° H4
E5 -42.7° 140.6° -9.9° -171.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3mkma_ : (GLU2) (ALA65) [view usage] : c.70.1.1 |Nucleoside hydrolase |Nucleoside hydrolase |Nucleoside hydrolase |Pyrimidine nucleoside hydrolase YeiK |Escherichia coli [TaxId: 562]
d4fila_ : (THR89) (ASP129) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d1w1ie_ : (ALA179) (HIS238) [view usage] : c.1.9.1 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Adenosine/AMP deaminase |Adenosine deaminase (ADA) |Cow (Bos taurus) [TaxId: 9913]
d3qfma_ : (LYS5) (LEU64) [view usage] : d.159.1.0 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 171101]
d3vd5a3 : (PRO348) (ALA413) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |beta-Galactosidase, domain 3 |Escherichia coli [TaxId: 562]
d3qfna_ : (LYS5) (LEU64) [view usage] : d.159.1.0 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 171101]
d3czja3 : (PRO348) (ALA413) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1o20a_ : (LEU220) (CYS289) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Gamma-glutamyl phosphate reductase |Thermotoga maritima [TaxId: 2336]
d1dosa_ : (GLY232) (THR289) [view usage] : c.1.10.2 |TIM beta/alpha-barrel |Aldolase |Class II FBP aldolase |Fructose-bisphosphate aldolase (FBP aldolase) |Escherichia coli [TaxId: 562]
d2gfqb_ : (GLY216) (GLY275) [view usage] : c.56.7.1 |Phosphorylase/hydrolase-like |AF0625-like |AF0625-like |Hypothetical protein PH0006 |Pyrococcus horikoshii [TaxId: 53953]
d1q8fa_ : (LYS5) (ALA65) [view usage] : c.70.1.1 |Nucleoside hydrolase |Nucleoside hydrolase |Nucleoside hydrolase |Pyrimidine nucleoside hydrolase YeiK |Escherichia coli [TaxId: 562]
d4gzia_ : (ILE26) (PRO80) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Potato (Solanum tuberosum) [TaxId: 4113]
d3pt6a5 : (ARG1143) (GLU1192) [view usage] : c.66.1.26 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |C5 cytosine-specific DNA methylase, DCM |Methyltransferase domain from DNA methyltransferase 1 (DNMT1) |Mouse (Mus musculus) [TaxId: 10090]
d2fk6a1 : (ARG31) (GLY92) [view usage] : d.157.1.7 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |RNase Z-like |Ribonuclease Z (RNase Z) |Bacillus subtilis [TaxId: 1423]
d3qfmb_ : (LYS5) (LEU64) [view usage] : d.159.1.0 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 171101]
d1pw5a_ : (ASP115) (GLY182) [view usage] : c.108.1.14 |HAD-like |HAD-like |NagD-like |Hypothetical protein TM1742 |Thermotoga maritima [TaxId: 2336]
d2masa_ : (LYS4) (GLY66) [view usage] : c.70.1.1 |Nucleoside hydrolase |Nucleoside hydrolase |Nucleoside hydrolase |Inosine-uridine nucleoside N-ribohydrolase, IU-NH |Crithidia fasciculata [TaxId: 5656]
d1nx9a2 : (ILE144) (SER229) [view usage] : c.69.1.21 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |PepX catalytic domain-like |Alpha-amino acid ester hydrolase |Acetobacter pasteurianus [TaxId: 438]
d4tmza1 : (PRO588) (ASN648) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Chaetomium thermophilum [TaxId: 209285]
d1mf8a_ : (PRO84) (ARG148) [view usage] : d.159.1.3 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Protein serine/threonine phosphatase |Protein phosphatase-2B (PP-2B, calcineurin A subunit) |Human (Homo sapiens) [TaxId: 9606]
d2zkie_ : (GLY73) (ILE144) [view usage] : c.23.5.0 |Flavodoxin-like |Flavoproteins |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 111955]
d1nlma_ : (ASP98) (ALA148) [view usage] : c.87.1.2 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Peptidoglycan biosynthesis glycosyltransferase MurG |Peptidoglycan biosynthesis glycosyltransferase MurG |Escherichia coli [TaxId: 562]
d4fl0b_ : (ASP214) (PHE282) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1ydha_ : (ARG10) (ILE72) [view usage] : c.129.1.1 |MCP/YpsA-like |MCP/YpsA-like |MoCo carrier protein-like |Hypothetical protein At5g11950 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2i00c2 : (TYR89) (ARG155) [view usage] : d.108.1.10 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |EF1021-like |Putative acetyltransferase EF2353 |Enterococcus faecalis [TaxId: 1351]
d3iaqa3 : (PRO348) (ALA413) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |beta-Galactosidase, domain 3 |Escherichia coli [TaxId: 562]
d2a7kh_ : (ARG46) (ALA122) [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |Carbapenem biosynthes protein CarB |Pectobacterium carotovorum [TaxId: 554]
d3muy13 : (PRO348) (ALA413) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1mpxa2 : (ILE113) (SER198) [view usage] : c.69.1.21 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |PepX catalytic domain-like |Alpha-amino acid ester hydrolase |Xanthomonas citri [TaxId: 346]
d2h8cb_ : (ASN2) (LYS101) [view usage] : d.79.6.1 |Bacillus chorismate mutase-like |Holliday junction resolvase RusA |Holliday junction resolvase RusA |automated matches |Escherichia coli [TaxId: 562]
d3b9xa_ : (LYS5) (ALA65) [view usage] : c.70.1.0 |Nucleoside hydrolase |Nucleoside hydrolase |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1d2ea3 : (ASP145) (GLY218) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Elongation factor Tu (EF-Tu), N-terminal (G) domain |Cow (Bos taurus), mitochondrial [TaxId: 9913]
d3pt6b5 : (ARG1143) (GLU1192) [view usage] : c.66.1.26 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |C5 cytosine-specific DNA methylase, DCM |Methyltransferase domain from DNA methyltransferase 1 (DNMT1) |Mouse (Mus musculus) [TaxId: 10090]
d1z82b1 : (ILE71) (SER126) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d1d2fa_ : (GLY146) (ILE203) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |Modulator in mal gene expression, MalY |Escherichia coli [TaxId: 562]
d3dyoa3 : (ARG352) (ALA413) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1tmla_ : (VAL36) (GLU115) [view usage] : c.6.1.1 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |Glycosyl hydrolases family 6, cellulases |Cellulase E2 |Thermobifida fusca YX [TaxId: 269800]
d3pola_ : (ASP-2) (SER69) [view usage] : c.68.1.0 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |automated matches |automated matches |Acinetobacter baumannii [TaxId: 400667]
d1iona_ : (GLU135) (GLU199) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Cell division regulator MinD |Pyrococcus horikoshii [TaxId: 53953]
d2e8qa_ : (MET1) (SER59) [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Diphthine synthase, DphB |Pyrococcus horikoshii [TaxId: 53953]
d3a4ya_ : (ARG24) (THR83) [view usage] : d.157.1.10 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |beta-CASP RNA-metabolising hydrolases |Putative RNA-degradation protein TTHA0252 |Thermus thermophilus [TaxId: 274]
d2gfqa1 : (GLY216) (ASP274) [view usage] : c.56.7.1 |Phosphorylase/hydrolase-like |AF0625-like |AF0625-like |Hypothetical protein PH0006 |Pyrococcus horikoshii [TaxId: 53953]
d1pdoa_ : (ASN30) (GLY92) [view usage] : c.54.1.1 |PTS system fructose IIA component-like |PTS system fructose IIA component-like |EIIA-man component-like |IIA domain of mannose transporter, IIA-Man |Escherichia coli [TaxId: 562]
d1m9na2 : (VAL535) (ASN587) [view usage] : c.97.1.4 |Cytidine deaminase-like |Cytidine deaminase-like |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |Chicken (Gallus gallus) [TaxId: 9031]
d1em8a_ : (ASP94) (ALA144) [view usage] : c.128.1.1 |DNA polymerase III chi subunit |DNA polymerase III chi subunit |DNA polymerase III chi subunit |DNA polymerase III chi subunit |Escherichia coli [TaxId: 562]
d3i3ba3 : (PRO348) (ALA413) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |beta-Galactosidase, domain 3 |Escherichia coli [TaxId: 562]
d3ur8a_ : (ILE26) (PRO80) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Potato (Solanum tuberosum) [TaxId: 4113]
d2v70a_ : (ALA536) (LEU589) [view usage] : c.10.2.0 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1fmtb2 : (ARG5) (VAL66) [view usage] : c.65.1.1 |Formyltransferase |Formyltransferase |Formyltransferase |Methionyl-tRNAfmet formyltransferase |Escherichia coli [TaxId: 562]
d1n25a_ : (LYS446) (ASN529) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Papillomavirus large T antigen helicase domain |Simian virus 40 [TaxId: 10633]
d1fmta2 : (ARG5) (VAL66) [view usage] : c.65.1.1 |Formyltransferase |Formyltransferase |Formyltransferase |Methionyl-tRNAfmet formyltransferase |Escherichia coli [TaxId: 562]
d3quaa_ : (TRP18) (PRO80) [view usage] : c.129.1.0 |MCP/YpsA-like |MCP/YpsA-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d4hpga_ : (VAL2) (PRO56) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Rubber tree (Hevea brasiliensis) [TaxId: 3981]
d1ro5a_ : (HIS98) (GLY163) [view usage] : d.108.1.3 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |Autoinducer synthetase |Autoinducer synthesis protein LasI |Pseudomonas aeruginosa [TaxId: 287]
d3pt9a3 : (ARG1143) (GLU1192) [view usage] : c.66.1.26 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |C5 cytosine-specific DNA methylase, DCM |Methyltransferase domain from DNA methyltransferase 1 (DNMT1) |Mouse (Mus musculus) [TaxId: 10090]
d1nofa2 : (PHE47) (PRO112) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Glycosyl hydrolase family 5 xylanase, catalytic domain |Erwinia chrysanthemi [TaxId: 556]
d3t7ma_ : (PHE6) (ASP62) [view usage] : c.68.1.14 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Glycogenin |Glycogenin |Human (Homo sapiens) [TaxId: 9606]
d2jffa2 : (GLY337) (GLU388) [view usage] : c.59.1.0 |MurD-like peptide ligases, peptide-binding domain |MurD-like peptide ligases, peptide-binding domain |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1a4la_ : (ALA179) (HIS238) [view usage] : c.1.9.1 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Adenosine/AMP deaminase |Adenosine deaminase (ADA) |Mouse (Mus musculus) [TaxId: 10090]
d2jzna_ : (ASN30) (GLY92) [view usage] : c.54.1.1 |PTS system fructose IIA component-like |PTS system fructose IIA component-like |EIIA-man component-like |IIA domain of mannose transporter, IIA-Man |Escherichia coli [TaxId: 562]
d3tbfc_ : (ASN516) (ASP569) [view usage] : c.80.1.1 |SIS domain |SIS domain |double-SIS domain |automated matches |Francisella tularensis [TaxId: 119856]
d2jfga2 : (GLY337) (GLU388) [view usage] : c.59.1.0 |MurD-like peptide ligases, peptide-binding domain |MurD-like peptide ligases, peptide-binding domain |automated matches |automated matches |Escherichia coli [TaxId: 562]
d3gdka_ : (ASP117) (GLY190) [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1fkwa_ : (ALA179) (HIS238) [view usage] : c.1.9.1 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Adenosine/AMP deaminase |Adenosine deaminase (ADA) |Mouse (Mus musculus) [TaxId: 10090]
d2fmta2 : (ARG5) (VAL66) [view usage] : c.65.1.1 |Formyltransferase |Formyltransferase |Formyltransferase |Methionyl-tRNAfmet formyltransferase |Escherichia coli [TaxId: 562]
d1f6wa_ : (ILE137) (SER220) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Bile-salt activated lipase (cholesterol esterase) |Human (Homo sapiens) [TaxId: 9606]
d3iapa3 : (PRO348) (ALA413) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |beta-Galactosidase, domain 3 |Escherichia coli [TaxId: 562]
d2deca_ : (GLU81) (PRO127) [view usage] : c.80.1.0 |SIS domain |SIS domain |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 70601]
d4tn1a1 : (PRO588) (ASN648) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Chaetomium thermophilum [TaxId: 209285]
d2b4ka2 : (ARG145) (SER229) [view usage] : c.69.1.21 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |PepX catalytic domain-like |Alpha-amino acid ester hydrolase |Acetobacter pasteurianus [TaxId: 438]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.10, c.67, c.69, c.2, d.159, c.6, c.68, c.108, c.90, c.82, c.56, c.92, d.157, c.66, c.80, c.14, c.23, c.37, c.87,
d.108, c.97, d.79, c.59, c.65, c.129, c.54, c.70, c.128