Tableau information
Concept source: d1rqxc_ amino acid (a.a.) range (ASP68)(PRO130)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP68) (GLY74) E1
(GLN80) (GLY92) H2
(CYS95) (ASN101) E3
(ASN115) (GLY123) H4
(ALA124) (PRO130) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -170.6° H2
E3 -10.0° -170.0° E3
H4 -164.3° 18.9° -154.8° H4
E5 -34.3° 151.0° -24.7° -132.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2qi9c_ : (GLN153) (LYS207) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |ABC transporter involved in vitamin B12 uptake, BtuD |Escherichia coli [TaxId: 562]
d2be7a2 : (ASN156) (THR211) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Aspartate carbamoyltransferase catalytic subunit |Moritella profunda [TaxId: 111291]
d1x0ma1 : (ILE169) (ASP237) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Hypothetical aminotransferase PH0207 |Pyrococcus horikoshii [TaxId: 53953]
d1wrab_ : (ASP104) (GLN170) [view usage] : d.157.1.8 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Pce catalytic domain-like |Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1gq3a2 : (HIS156) (SER213) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Aspartate carbamoyltransferase catalytic subunit |Escherichia coli [TaxId: 562]
d2acvb_ : (SER277) (GLY338) [view usage] : c.87.1.10 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |UDPGT-like |Triterpene UDP-glucosyl transferase UGT71G1 |Medicago truncatula [TaxId: 3880]
d4empa_ : (ARG28) (CYS92) [view usage] : c.14.1.1 |ClpP/crotonase |ClpP/crotonase |Clp protease, ClpP subunit |Clp protease, ClpP subunit |Staphylococcus aureus [TaxId: 196620]
d2fp4a1 : (THR74) (GLY129) [view usage] : c.2.1.8 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |CoA-binding domain |Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain |Pig (Sus scrofa) [TaxId: 9823]
d2c71a1 : (LYS480) (ASN538) [view usage] : c.6.2.3 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |NodB-like polysaccharide deacetylase |Xylanase XynA C-terminal domain |Clostridium thermocellum [TaxId: 1515]
d3tlkb_ : (GLN47) (TYR102) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d1inia_ : (ASP7) (ASP83) [view usage] : c.68.1.13 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Cytidylytransferase |4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) |Escherichia coli [TaxId: 562]
d2c1ia1 : (LYS268) (ASN325) [view usage] : c.6.2.3 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |NodB-like polysaccharide deacetylase |Peptidoglycan GlcNAc deacetylase C-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1acma2 : (HIS156) (SER213) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Aspartate carbamoyltransferase catalytic subunit |Escherichia coli [TaxId: 562]
d2b69a1 : (ARG6) (ASN58) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |UDP-glucuronate decarboxylase 1 |Human (Homo sapiens) [TaxId: 9606]
d4q0ma_ : (LYS201) (THR261) [view usage] : c.88.1.0 |Glutaminase/Asparaginase |Glutaminase/Asparaginase |automated matches |automated matches |Pyrococcus furiosus [TaxId: 186497]
d3vaxa_ : (LEU141) (SER197) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Streptomyces lividans [TaxId: 1916]
d1g8ma2 : (PHE319) (ASP369) [view usage] : c.97.1.4 |Cytidine deaminase-like |Cytidine deaminase-like |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |Chicken (Gallus gallus) [TaxId: 9031]
d1zq1a2 : (LYS306) (MSE362) [view usage] : c.88.1.1 |Glutaminase/Asparaginase |Glutaminase/Asparaginase |Glutaminase/Asparaginase |Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD |Pyrococcus abyssi [TaxId: 29292]
d1nmoa_ : (LYS37) (LEU98) [view usage] : c.135.1.1 |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |Hypothetical protein YbgI |Escherichia coli [TaxId: 562]
d3qv2a_ : (GLN3) (ASN58) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Entamoeba (Entamoeba histolytica) [TaxId: 5759]
d1vdca2 : (LYS146) (ASN201) [view usage] : c.3.1.5 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |FAD/NAD-linked reductases, N-terminal and central domains |Thioredoxin reductase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2a0fa2 : (LEU155) (LEU211) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Aspartate carbamoyltransferase catalytic subunit |Escherichia coli [TaxId: 562]
d4c5ja_ : (ALA75) (ASN139) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 158878]
d1i36a2 : (LEU1) (SER50) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |Conserved hypothetical protein MTH1747 |Methanobacterium thermoautotrophicum [TaxId: 145262]
d2fywc_ : (GLN37) (VAL97) [view usage] : c.135.1.1 |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |Hypothetical protein SP1609 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d3r5sa_ : (ARG53) (TRP100) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Vibrio cholerae [TaxId: 666]
d1mo9a2 : (SER215) (GLY275) [view usage] : c.3.1.5 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |FAD/NAD-linked reductases, N-terminal and central domains |NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase |Xanthobacter sp., py2 [TaxId: 35809]
d1onfa2 : (LYS176) (PHE236) [view usage] : c.3.1.5 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |FAD/NAD-linked reductases, N-terminal and central domains |Glutathione reductase |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d1m9na2 : (PHE319) (ASP369) [view usage] : c.97.1.4 |Cytidine deaminase-like |Cytidine deaminase-like |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |Chicken (Gallus gallus) [TaxId: 9031]
d1vb3a1 : (PRO126) (ALA181) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Threonine synthase |Escherichia coli [TaxId: 562]
d2acva_ : (SER277) (GLY338) [view usage] : c.87.1.10 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |UDPGT-like |Triterpene UDP-glucosyl transferase UGT71G1 |Medicago truncatula [TaxId: 3880]
d9atca2 : (LEU155) (SER213) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Aspartate carbamoyltransferase catalytic subunit |Escherichia coli [TaxId: 562]
d2biba2 : (ASP79) (ASN146) [view usage] : d.157.1.8 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Pce catalytic domain-like |Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1dt3a_ : (VAL140) (HIS198) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Triacylglycerol lipase |Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]
d1gt6a_ : (VAL140) (HIS198) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Triacylglycerol lipase |Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]
d1skua2 : (LEU155) (SER213) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Aspartate carbamoyltransferase catalytic subunit |Escherichia coli [TaxId: 562]
d4dlla1 : (ARG32) (GLN80) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Polaromonas sp. [TaxId: 296591]
d2vyoa_ : (GLY26) (LEU85) [view usage] : c.6.2.0 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |automated matches |automated matches |Encephalitozoon cuniculi [TaxId: 284813]
d1qp8a1 : (ASP203) (PRO259) [view usage] : c.2.1.4 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Formate/glycerate dehydrogenases, NAD-domain |Putative formate dehydrogenase |Pyrobaculum aerophilum [TaxId: 13773]
d1nmpa_ : (LYS37) (LEU98) [view usage] : c.135.1.1 |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |Hypothetical protein YbgI |Escherichia coli [TaxId: 562]
d1nmpa_ : (ARG167) (GLY214) [view usage] : c.135.1.1 |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |Hypothetical protein YbgI |Escherichia coli [TaxId: 562]
d2gnoa2 : (VAL59) (ASN125) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |gamma subunit of DNA polymerase III, N-domain |Thermotoga maritima [TaxId: 2336]
d2o8rb3 : (SER369) (SER430) [view usage] : d.136.1.4 |Phospholipase D/nuclease |Phospholipase D/nuclease |Polyphosphate kinase C-terminal domain |Polyphosphate kinase, PPK |Porphyromonas gingivalis [TaxId: 837]
d1p4ra2 : (PHE318) (ASP368) [view usage] : c.97.1.4 |Cytidine deaminase-like |Cytidine deaminase-like |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |Human (Homo sapiens) [TaxId: 9606]
d1wraa1 : (ASP104) (GLN170) [view usage] : d.157.1.8 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Pce catalytic domain-like |Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2fywa1 : (GLN37) (VAL97) [view usage] : c.135.1.1 |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |Hypothetical protein SP1609 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1gt8a3 : (GLY333) (PHE390) [view usage] : c.3.1.1 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |C-terminal domain of adrenodoxin reductase-like |Dihydropyrimidine dehydrogenase, domain 3 |Pig (Sus scrofa) [TaxId: 9823]
d1v4va_ : (LEU276) (GLY318) [view usage] : c.87.1.3 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-N-acetylglucosamine 2-epimerase |UDP-N-acetylglucosamine 2-epimerase |Thermus thermophilus [TaxId: 274]
d3tlkc_ : (GLN47) (TYR102) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d4glla_ : (ARG90) (ASN142) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2fywb_ : (GLN37) (VAL97) [view usage] : c.135.1.1 |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |Hypothetical protein SP1609 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.67, c.69, c.2, c.6, c.68, c.79, c.92, d.157, c.66, c.14, c.135, c.72, c.37, c.87, c.78, c.97, c.3, c.88, d.136