Tableau information
Concept source: d4knab_ amino acid (a.a.) range (PRO380)(ASN431)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO380) (ARG386) E1
(LEU390) (ASP399) H2
(LEU404) (ALA410) E3
(GLU413) (ALA422) H4
(GLY426) (ASN431) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 140.4° H2
E3 -53.4° 164.4° E3
H4 109.2° -31.7° 162.3° H4
E5 -73.9° 142.8° -21.6° 168.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4iyme_ : (PRO385) (ASN436) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d2bm9b_ : (ASN131) (GLU186) [view usage] : c.66.1.50 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |CmcI-like |Cephalosporin hydroxylase CmcI |Streptomyces clavuligerus [TaxId: 1901]
d4iymo_ : (PRO385) (ASN436) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d2b7la_ : (LEU67) (ARG113) [view usage] : c.26.1.2 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Cytidylyltransferase |automated matches |Staphylococcus aureus [TaxId: 1280]
d4k57a_ : (PRO421) (ASN472) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |automated matches |Thermus thermophilus [TaxId: 262724]
d1mu7a1 : (PRO163) (HIS228) [view usage] : d.136.1.3 |Phospholipase D/nuclease |Phospholipase D/nuclease |Tyrosyl-DNA phosphodiesterase TDP1 |Tyrosyl-DNA phosphodiesterase TDP1 |Human (Homo sapiens) [TaxId: 9606]
d1vbka2 : (PRO76) (ASP144) [view usage] : d.308.1.1 |THUMP domain |THUMP domain-like |THUMP domain |Hypothetical protein PH1313, N-terminal domain |Pyrococcus horikoshii [TaxId: 53953]
d4tn1b1 : (LEU591) (ASN648) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Chaetomium thermophilum [TaxId: 209285]
d1uyqa1 : (GLN311) (ALA397) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Beta-glucosidase A |Bacillus polymyxa [TaxId: 1406]
d1nw3a_ : (ALA214) (SER268) [view usage] : c.66.1.31 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Catalytic, N-terminal domain of histone methyltransferase Dot1l |Catalytic, N-terminal domain of histone methyltransferase Dot1l |Human (Homo sapiens) [TaxId: 9606]
d3ndca_ : (THR2) (ALA55) [view usage] : c.90.1.0 |Tetrapyrrole methylase |Tetrapyrrole methylase |automated matches |automated matches |Rhodobacter capsulatus [TaxId: 272942]
d1r1ma_ : (PRO68) (GLY159) [view usage] : d.79.7.1 |Bacillus chorismate mutase-like |OmpA-like |OmpA-like |Outer membrane protein class 4, RmpM, C-terminal domain |Neisseria meningitidis [TaxId: 487]
d2ja1a1 : (LYS64) (GLY115) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Bacillus cereus [TaxId: 1396]
d3gxac_ : (LYS191) (PHE234) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Neisseria meningitidis [TaxId: 487]
d2b7lb_ : (LEU567) (ARG613) [view usage] : c.26.1.2 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Cytidylyltransferase |automated matches |Staphylococcus aureus [TaxId: 1280]
d2yivx_ : (PRO519) (GLY581) [view usage] : e.26.1.2 |Prismane protein-like |Prismane protein-like |Carbon monoxide dehydrogenase |Ni-containing carbon monoxide dehydrogenase |Carboxydothermus hydrogenoformans [TaxId: 129958]
d1o20a_ : (LEU314) (ASN365) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Gamma-glutamyl phosphate reductase |Thermotoga maritima [TaxId: 2336]
d1yzya1 : (ALA42) (ALA113) [view usage] : c.146.1.1 |YgbK-like |YgbK-like |YgbK-like |Hypothetical protein HI1011 |Haemophilus influenzae [TaxId: 727]
d1p48a1 : (GLY213) (ASP296) [view usage] : c.1.11.1 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |Enolase |Enolase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4jycc_ : (ASN117) (LEU177) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Metallochaperone MeaB |Methylobacterium extorquens [TaxId: 408]
d1svvb_ : (HIS114) (ALA185) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Low-specificity threonine aldolase |Leishmania major [TaxId: 5664]
d1es9a_ : (HIS66) (LEU136) [view usage] : c.23.10.3 |Flavodoxin-like |SGNH hydrolase |Acetylhydrolase |Platelet-activating factor acetylhydrolase |Cow (Bos taurus), alpha1 [TaxId: 9913]
d1svva_ : (HIS114) (ALA185) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Low-specificity threonine aldolase |Leishmania major [TaxId: 5664]
d1mioa_ : (GLY437) (GLN480) [view usage] : c.92.2.3 |Chelatase-like |"Helical backbone" metal receptor |Nitrogenase iron-molybdenum protein |Nitrogenase iron-molybdenum protein, alpha chain |Clostridium pasteurianum [TaxId: 1501]
d2b4gb_ : (LEU64) (LEU129) [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1oa0a_ : (ARG445) (PRO509) [view usage] : e.26.1.1 |Prismane protein-like |Prismane protein-like |Hybrid cluster protein (prismane protein) |Hybrid cluster protein (prismane protein) |Desulfovibrio desulfuricans [TaxId: 876]
d1acoa2 : (VAL136) (GLY182) [view usage] : c.83.1.1 |Aconitase iron-sulfur domain |Aconitase iron-sulfur domain |Aconitase iron-sulfur domain |Aconitase A, N-terminal domain |Cow (Bos taurus) [TaxId: 9913]
d1oe5a_ : (PRO177) (MET249) [view usage] : c.18.1.3 |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase-like |Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 |Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 |African clawed frog (Xenopus laevis) [TaxId: 8355]
d2y4ka_ : (THR59) (PRO130) [view usage] : c.68.1.18 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |MGS-like |Mannosylglycerate synthase, MGS |Rhodothermus marinus [TaxId: 29549]
d1oaoa_ : (PRO543) (GLY605) [view usage] : e.26.1.2 |Prismane protein-like |Prismane protein-like |Carbon monoxide dehydrogenase |Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH) subunit |Moorella thermoacetica [TaxId: 1525]
d1ytla1 : (VAL83) (ASP142) [view usage] : c.31.1.6 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |ACDE2-like |Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 |Archaeoglobus fulgidus [TaxId: 2234]
d4obba_ : (PRO95) (SER153) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Anabaena variabilis [TaxId: 240292]
d1b0ja2 : (VAL136) (GLY182) [view usage] : c.83.1.1 |Aconitase iron-sulfur domain |Aconitase iron-sulfur domain |Aconitase iron-sulfur domain |Aconitase A, N-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d1bzya_ : (GLY111) (LEU162) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Hypoxanthine-guanine PRTase (HGPRTase) |Human (Homo sapiens) [TaxId: 9606]
d1ytlc_ : (VAL83) (ASP142) [view usage] : c.31.1.6 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |ACDE2-like |Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 |Archaeoglobus fulgidus [TaxId: 2234]
d3qgma_ : (ASP179) (LEU229) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d2xdra_ : (ASN203) (ALA252) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d2gftb_ : (GLY158) (TYR234) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Bacillus licheniformis [TaxId: 1402]
d1f8ia_ : (GLY257) (SER315) [view usage] : c.1.12.7 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Phosphoenolpyruvate mutase/Isocitrate lyase-like |Isocitrate lyase |Mycobacterium tuberculosis [TaxId: 1773]
d1x1pa1 : (ASP61) (HIS132) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |Class II ribonuclease H (RNase HII) |Pyrococcus horikoshii [TaxId: 53953]
d4knab_ : (PRO380) (ASN431) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Burkholderia thailandensis [TaxId: 271848]
d3ryca2 : (LEU269) (TYR357) [view usage] : d.79.2.1 |Bacillus chorismate mutase-like |Tubulin C-terminal domain-like |Tubulin, C-terminal domain |automated matches |Sheep (Ovis aries) [TaxId: 9940]
d1atra1 : (THR111) (ASN174) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Heat shock protein 70kDa, ATPase fragment |Cow (Bos taurus) [TaxId: 9913]
d2pa6a2 : (GLY214) (ASP290) [view usage] : c.1.11.1 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |Enolase |Enolase |Methanocaldococcus jannaschii [TaxId: 2190]
d1gted2 : (CYS671) (THR735) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Dihydropyrimidine dehydrogenase, domain 4 |Pig (Sus scrofa) [TaxId: 9823]
d4f6ra2 : (LEU269) (TYR357) [view usage] : d.79.2.1 |Bacillus chorismate mutase-like |Tubulin C-terminal domain-like |Tubulin, C-terminal domain |automated matches |Sheep (Ovis aries) [TaxId: 9940]
d4iymc_ : (PRO385) (ASN436) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d1ui9a_ : (MET1) (ARG76) [view usage] : d.79.1.2 |Bacillus chorismate mutase-like |YjgF-like |Chorismate mutase |Chorismate mutase |Thermus thermophilus [TaxId: 274]
d4jjfa1 : (GLY124) (CYS172) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Methanothermobacter marburgensis [TaxId: 79929]
d1su6a_ : (PRO519) (GLY581) [view usage] : e.26.1.2 |Prismane protein-like |Prismane protein-like |Carbon monoxide dehydrogenase |Ni-containing carbon monoxide dehydrogenase |Carboxydothermus hydrogenoformans [TaxId: 129958]
d3ea0a_ : (GLU140) (PRO203) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Chlorobium tepidum [TaxId: 194439]
d1ufya_ : (MET1) (PRO81) [view usage] : d.79.1.2 |Bacillus chorismate mutase-like |YjgF-like |Chorismate mutase |Chorismate mutase |Thermus thermophilus [TaxId: 274]
d4h17a_ : (GLU97) (ASP155) [view usage] : c.33.1.0 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |automated matches |automated matches |Pseudomonas putida [TaxId: 160488]
d3k4ha_ : (GLY43) (GLY99) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Bacillus cytotoxicus [TaxId: 315749]
d1jmva_ : (LYS83) (ASP140) [view usage] : c.26.2.4 |Adenine nucleotide alpha hydrolase-like |Adenine nucleotide alpha hydrolases-like |Universal stress protein-like |Universal stress protein A, UspA |Haemophilus influenzae [TaxId: 727]
d1em8a_ : (LYS2) (ALA83) [view usage] : c.128.1.1 |DNA polymerase III chi subunit |DNA polymerase III chi subunit |DNA polymerase III chi subunit |DNA polymerase III chi subunit |Escherichia coli [TaxId: 562]
d1w36c1 : (LEU2) (LEU64) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain |Escherichia coli [TaxId: 562]
d4knaa_ : (PRO380) (ASN431) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Burkholderia thailandensis [TaxId: 271848]
d1mrza2 : (ARG68) (ASP127) [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |FMN adenylyltransferase domain of bifunctional FAD synthetase |Thermotoga maritima [TaxId: 2336]
d1taea_ : (ALA230) (GLY287) [view usage] : d.142.2.2 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |Adenylation domain of NAD+-dependent DNA ligase |Adenylation domain of NAD+-dependent DNA ligase |Enterococcus faecalis [TaxId: 1351]
d4e4gf_ : (PRO385) (ASN436) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d4e4gb_ : (PRO385) (ASN436) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d3zqaa_ : (ASN203) (GLU252) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d4hwra1 : (GLY378) (GLY457) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1mjga_ : (PRO543) (GLY605) [view usage] : e.26.1.2 |Prismane protein-like |Prismane protein-like |Carbon monoxide dehydrogenase |Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH) subunit |Moorella thermoacetica [TaxId: 1525]
d2br5a_ : (ASN131) (GLU186) [view usage] : c.66.1.50 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |CmcI-like |Cephalosporin hydroxylase CmcI |Streptomyces clavuligerus [TaxId: 1901]
d1jqka_ : (LEU524) (GLY586) [view usage] : e.26.1.2 |Prismane protein-like |Prismane protein-like |Carbon monoxide dehydrogenase |Ni-containing carbon monoxide dehydrogenase |Rhodospirillum rubrum [TaxId: 1085]
d1oe4a_ : (PRO177) (MET249) [view usage] : c.18.1.3 |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase-like |Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 |Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 |African clawed frog (Xenopus laevis) [TaxId: 8355]
d1nyqa4 : (GLY380) (GLY463) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Threonyl-tRNA synthetase (ThrRS) |Staphylococcus aureus [TaxId: 1280]
d3h5oa_ : (ASP157) (PRO226) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Chromobacterium violaceum [TaxId: 536]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.94, c.2, c.68, c.108, c.90, c.82, c.26, c.92, c.66, c.93, c.23, c.37, d.104, c.18, c.55, c.31, c.33, c.61,
d.79, d.142, e.26, c.83, d.136, d.308, c.146, c.128