Tableau information
Concept source: d1i7pa2 amino acid (a.a.) range (LYS172)(ASP239)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS172) (ALA178) E1
(GLY180) (ASP196) H2
(HIS200) (GLN210) E3
(LEU217) (GLU227) H4
(LYS233) (ASP239) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -154.9° H2
E3 -12.7° -162.2° E3
H4 -159.1° 28.7° -150.5° H4
E5 -21.9° -173.9° -12.4° -149.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2jlra1 : (ILE256) (THR315) [view usage] : c.37.1.14 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RNA helicase |automated matches |Dengue virus 4 [TaxId: 408688]
d3mcab2 : (LYS291) (SER347) [view usage] : d.79.3.0 |Bacillus chorismate mutase-like |L30e-like |automated matches |automated matches |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d1jjac_ : (PRO212) (SER270) [view usage] : c.88.1.1 |Glutaminase/Asparaginase |Glutaminase/Asparaginase |Glutaminase/Asparaginase |Asparaginase type II |Escherichia coli [TaxId: 562]
d1f20a2 : (VAL1242) (SER1313) [view usage] : c.25.1.4 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |NADPH-cytochrome p450 reductase-like |Neuronal nitric-oxide synthase FAD/NADP+ domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1yksa1 : (VAL261) (THR320) [view usage] : c.37.1.14 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RNA helicase |YFV helicase domain |Yellow fever virus [TaxId: 11089]
d1j6ua1 : (MSE1) (PRO51) [view usage] : c.5.1.1 |MurCD N-terminal domain |MurCD N-terminal domain |MurCD N-terminal domain |UDP-N-acetylmuramate-alanine ligase MurC |Thermotoga maritima [TaxId: 2336]
d2c1ga1 : (LYS268) (SER327) [view usage] : c.6.2.3 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |NodB-like polysaccharide deacetylase |Peptidoglycan GlcNAc deacetylase C-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1ja1a3 : (PRO527) (PHE595) [view usage] : c.25.1.4 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |NADPH-cytochrome p450 reductase-like |NADPH-cytochrome p450 reductase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1v7ca_ : (GLN78) (GLU131) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Threonine synthase |Thermus thermophilus [TaxId: 274]
d1xxhb2 : (ILE91) (ALA155) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |gamma subunit of DNA polymerase III, N-domain |Escherichia coli [TaxId: 562]
d1xeua1 : (GLN78) (VAL126) [view usage] : c.10.2.0 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |automated matches |automated matches |Listeria monocytogenes [TaxId: 1639]
d1nnsa_ : (PRO212) (SER270) [view usage] : c.88.1.1 |Glutaminase/Asparaginase |Glutaminase/Asparaginase |Glutaminase/Asparaginase |Asparaginase type II |Escherichia coli [TaxId: 562]
d1h6ta2 : (GLU167) (LYS217) [view usage] : c.10.2.1 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Internalin LRR domain |Internalin B |Listeria monocytogenes [TaxId: 1639]
d1umka2 : (LYS172) (ASP239) [view usage] : c.25.1.1 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |Reductases |cytochrome b5 reductase |Human (Homo sapiens) [TaxId: 9606]
d1tubb1 : (ILE4) (PHE94) [view usage] : c.32.1.1 |Tubulin nucleotide-binding domain-like |Tubulin nucleotide-binding domain-like |Tubulin, GTPase domain |Tubulin beta-subunit |Pig (Sus scrofa) [TaxId: 9823]
d3qe2a3 : (THR529) (PHE598) [view usage] : c.25.1.0 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1cdda_ : (ASN2) (ILE57) [view usage] : c.65.1.1 |Formyltransferase |Formyltransferase |Formyltransferase |Glycinamide ribonucleotide transformylase, GART |Escherichia coli [TaxId: 562]
d3kg2a1 : (ARG190) (VAL248) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Ionotropic glutamate receptor 2 (GluR2) amino-terminal domain (ATD) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2jlsa1 : (GLU255) (THR315) [view usage] : c.37.1.14 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RNA helicase |automated matches |Dengue virus 4 [TaxId: 408688]
d2gjua_ : (VAL4) (ARG70) [view usage] : d.159.1.5 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Phosphoesterase-related |automated matches |Pyrococcus horikoshii [TaxId: 70601]
d1jdea2 : (LYS406) (ARG449) [view usage] : c.8.1.1 |The "swivelling" beta/beta/alpha domain |Phosphohistidine domain |Pyruvate phosphate dikinase, central domain |Pyruvate phosphate dikinase, central domain |Clostridium symbiosum [TaxId: 1512]
d4eh1a2 : (PRO117) (TYR178) [view usage] : c.25.1.0 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d1ogqa_ : (ASN79) (PHE132) [view usage] : c.10.2.8 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Polygalacturonase inhibiting protein PGIP |Polygalacturonase inhibiting protein PGIP |French bean (Phaseolus vulgaris) [TaxId: 3885]
d2z1za_ : (ASP200) (PHE268) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d4dqka2 : (THR897) (SER966) [view usage] : c.25.1.0 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |automated matches |automated matches |Bacillus megaterium [TaxId: 1404]
d1xxha2 : (GLU48) (GLY114) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |delta subunit of DNA polymerase III, N-domain |Escherichia coli [TaxId: 562]
d1l7vc_ : (GLN153) (GLY208) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |ABC transporter involved in vitamin B12 uptake, BtuD |Escherichia coli [TaxId: 562]
d1i7pa2 : (LYS172) (ASP239) [view usage] : c.25.1.1 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |Reductases |cytochrome b5 reductase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1cqxa3 : (PRO268) (TYR330) [view usage] : c.25.1.5 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |Flavohemoglobin, C-terminal domain |Flavohemoglobin, C-terminal domain |Alcaligenes eutrophus [TaxId: 106590]
d3dlxb1 : (GLY84) (PRO137) [view usage] : c.124.1.2 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase alpha subunit-like |Succinate:CoA transferase, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1gvha3 : (PRO261) (TYR324) [view usage] : c.25.1.5 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |Flavohemoglobin, C-terminal domain |Flavohemoglobin, C-terminal domain |Escherichia coli [TaxId: 562]
d3cdka_ : (ASP48) (PRO101) [view usage] : c.124.1.0 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d2nvva1 : (GLY50) (HIS104) [view usage] : c.124.1.0 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |automated matches |automated matches |Porphyromonas gingivalis [TaxId: 242619]
d3lhla_ : (ILE128) (GLY193) [view usage] : c.42.1.0 |Arginase/deacetylase |Arginase/deacetylase |automated matches |automated matches |Clostridium difficile [TaxId: 272563]
d4dqla2 : (THR897) (SER966) [view usage] : c.25.1.0 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |automated matches |automated matches |Bacillus megaterium [TaxId: 1404]
d1tlla3 : (VAL1242) (ARG1314) [view usage] : c.25.1.4 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |NADPH-cytochrome p450 reductase-like |Neuronal nitric-oxide synthase FAD/NADP+ domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1ygya1 : (GLY225) (PRO279) [view usage] : c.2.1.4 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Formate/glycerate dehydrogenases, NAD-domain |Phosphoglycerate dehydrogenase |Mycobacterium tuberculosis [TaxId: 1773]
d2uzxa1 : (ASP79) (GLU129) [view usage] : c.10.2.1 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Internalin LRR domain |automated matches |Listeria monocytogenes [TaxId: 169963]
d3i9v33 : (TYR565) (PRO603) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2jlua1 : (ILE256) (THR315) [view usage] : c.37.1.14 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RNA helicase |automated matches |Dengue virus 4 [TaxId: 408688]
d1nnwa_ : (ALA5) (LYS72) [view usage] : d.159.1.5 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Phosphoesterase-related |Hypothetical protein PF1291 |Pyrococcus furiosus [TaxId: 2261]
d1nnwb_ : (ALA5) (ARG70) [view usage] : d.159.1.5 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Phosphoesterase-related |Hypothetical protein PF1291 |Pyrococcus furiosus [TaxId: 2261]
d1xr4a1 : (ASP88) (SER141) [view usage] : c.124.1.2 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase alpha subunit-like |Putative citrate lyase alpha chain, citF2 |Salmonella typhimurium [TaxId: 90371]
d4eu9a1 : (GLY59) (HIS113) [view usage] : c.124.1.0 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |automated matches |automated matches |Acetobacter aceti [TaxId: 435]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.10, c.67, c.81, c.2, d.159, c.6, c.79, c.124, c.93, c.42, c.37, c.32, c.8, c.25, d.79, c.65, c.88, c.5