Tableau information
Concept source: d3lteb_ amino acid (a.a.) range (LYS68)(ASP118)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS68) (ASP74) E1
(ALA78) (HIS91) H2
(GLN93) (ASN99) E3
(GLY100) (GLU111) H4
(ALA113) (ASP118) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 168.6° H2
E3 -22.6° 166.4° E3
H4 173.7° -17.3° 153.2° H4
E5 -17.9° 150.6° -39.1° 167.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3teoa_ : (ARG29) (HIS88) [view usage] : c.53.2.0 |Resolvase-like |beta-carbonic anhydrase, cab |automated matches |automated matches |Acidianus sp. [TaxId: 1071056]
d1xova2 : (ASN3) (LYS84) [view usage] : c.56.5.6 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |N-acetylmuramoyl-L-alanine amidase-like |Endolysin Ply, catalytic domain |Bacteriophage Psa [TaxId: 171618]
d3to5a_ : (LYS10) (ASP60) [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |automated matches |Vibrio cholerae [TaxId: 666]
d3kkec_ : (SER61) (ARG125) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d3a9ra1 : (LEU11) (PRO93) [view usage] : c.85.1.0 |FucI/AraA N-terminal and middle domains |FucI/AraA N-terminal and middle domains |automated matches |automated matches |Geobacillus pallidus [TaxId: 33936]
d1di0c_ : (PHE13) (GLY84) [view usage] : c.16.1.1 |Lumazine synthase |Lumazine synthase |Lumazine synthase |Lumazine synthase |Brucella abortus [TaxId: 235]
d3hs3a_ : (LYS60) (SER123) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Lactobacillus acidophilus [TaxId: 1579]
d3dc7a1 : (ARG23) (GLY90) [view usage] : c.23.10.9 |Flavodoxin-like |SGNH hydrolase |BT2961-like |Uncharacterized protein Lp3323 |Lactobacillus plantarum [TaxId: 1590]
d2qu7a_ : (ILE67) (PRO127) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Staphylococcus saprophyticus [TaxId: 342451]
d1byka_ : (LYS63) (PHE125) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Trehalose repressor, C-terminal domain |Escherichia coli [TaxId: 562]
d4c21b1 : (ILE2) (PRO86) [view usage] : c.85.1.0 |FucI/AraA N-terminal and middle domains |FucI/AraA N-terminal and middle domains |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 170187]
d3bzwb_ : (LYS47) (MSE115) [view usage] : c.23.10.9 |Flavodoxin-like |SGNH hydrolase |BT2961-like |Uncharacterized protein BT2961 |Bacteroides thetaiotaomicron [TaxId: 818]
d3bzwa1 : (LYS47) (MSE115) [view usage] : c.23.10.9 |Flavodoxin-like |SGNH hydrolase |BT2961-like |Uncharacterized protein BT2961 |Bacteroides thetaiotaomicron [TaxId: 818]
d1kbza_ : (MET1) (ALA61) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) |Salmonella typhimurium [TaxId: 90371]
d1vjoa_ : (VAL99) (VAL154) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |Alanine-glyoxylate aminotransferase |Nostoc sp. PCC 7120 [TaxId: 103690]
d1wu7b1 : (LYS333) (GLY390) [view usage] : c.51.1.1 |Anticodon-binding domain-like |Class II aaRS ABD-related |Anticodon-binding domain of Class II aaRS |Histidyl-tRNA synthetase (HisRS), C-terminal domain |Thermoplasma acidophilum [TaxId: 2303]
d3v4zb1 : (GLU3) (ILE60) [view usage] : c.30.1.0 |PreATP-grasp domain |PreATP-grasp domain |automated matches |automated matches |Yersinia pestis [TaxId: 214092]
d1qdlb_ : (ASP2) (GLY54) [view usage] : c.23.16.1 |Flavodoxin-like |Class I glutamine amidotransferase-like |Class I glutamine amidotransferases (GAT) |Anthranilate synthase GAT subunit, TrpG |Sulfolobus solfataricus [TaxId: 2287]
d1qe0a1 : (ASP331) (ASP388) [view usage] : c.51.1.1 |Anticodon-binding domain-like |Class II aaRS ABD-related |Anticodon-binding domain of Class II aaRS |Histidyl-tRNA synthetase (HisRS), C-terminal domain |Staphylococcus aureus [TaxId: 1280]
d1di0d_ : (PHE13) (GLY84) [view usage] : c.16.1.1 |Lumazine synthase |Lumazine synthase |Lumazine synthase |Lumazine synthase |Brucella abortus [TaxId: 235]
d3c97a_ : (SER554) (ASP603) [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Aspergillus oryzae [TaxId: 510516]
d1wytb1 : (ARG157) (THR210) [view usage] : c.67.1.7 |PLP-dependent transferase-like |PLP-dependent transferases |Glycine dehydrogenase subunits (GDC-P) |Glycine dehydrogenase subunit 2 (P-protein) |Thermus thermophilus [TaxId: 274]
d4hwtb2 : (GLN653) (GLY710) [view usage] : c.51.1.0 |Anticodon-binding domain-like |Class II aaRS ABD-related |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wu7a1 : (LYS333) (GLY390) [view usage] : c.51.1.1 |Anticodon-binding domain-like |Class II aaRS ABD-related |Anticodon-binding domain of Class II aaRS |Histidyl-tRNA synthetase (HisRS), C-terminal domain |Thermoplasma acidophilum [TaxId: 2303]
d2ywca1 : (MSE1) (GLY50) [view usage] : c.23.16.1 |Flavodoxin-like |Class I glutamine amidotransferase-like |Class I glutamine amidotransferases (GAT) |GMP synthetase |Thermus thermophilus HB8 [TaxId: 300852]
d1qe0b1 : (GLU328) (ASP388) [view usage] : c.51.1.1 |Anticodon-binding domain-like |Class II aaRS ABD-related |Anticodon-binding domain of Class II aaRS |Histidyl-tRNA synthetase (HisRS), C-terminal domain |Staphylococcus aureus [TaxId: 1280]
d4c22b1 : (GLY8) (PRO86) [view usage] : c.85.1.0 |FucI/AraA N-terminal and middle domains |FucI/AraA N-terminal and middle domains |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 170187]
d1b73a1 : (MET1) (CYS70) [view usage] : c.78.2.1 |ATC-like |Aspartate/glutamate racemase |Aspartate/glutamate racemase |Glutamate racemase |Aquifex pyrophilus [TaxId: 2714]
d2fvta1 : (ASP69) (ILE124) [view usage] : c.103.1.1 |MTH938-like |MTH938-like |MTH938-like |Hypothetical protein RPA2829 |Rhodopseudomonas palustris [TaxId: 1076]
d1atia1 : (LYS400) (ASP459) [view usage] : c.51.1.1 |Anticodon-binding domain-like |Class II aaRS ABD-related |Anticodon-binding domain of Class II aaRS |Glycyl-tRNA synthetase (GlyRS), C-terminal domain |Thermus thermophilus [TaxId: 274]
d4c20b1 : (ILE2) (PRO86) [view usage] : c.85.1.0 |FucI/AraA N-terminal and middle domains |FucI/AraA N-terminal and middle domains |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 170187]
d2fkmx1 : (CYS50) (LEU105) [view usage] : c.84.1.1 |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Phosphomannomutase/phosphoglucomutase |Pseudomonas aeruginosa [TaxId: 287]
d1tjna_ : (ARG2) (PRO66) [view usage] : c.92.1.3 |Chelatase-like |Chelatase |CbiX-like |Sirohydrochlorin cobaltochelatase CbiX |Archaeoglobus fulgidus [TaxId: 2234]
d1htta1 : (ASP330) (GLY388) [view usage] : c.51.1.1 |Anticodon-binding domain-like |Class II aaRS ABD-related |Anticodon-binding domain of Class II aaRS |Histidyl-tRNA synthetase (HisRS), C-terminal domain |Escherichia coli [TaxId: 562]
d3oxnd_ : (GLN116) (CYS171) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Vibrio parahaemolyticus [TaxId: 670]
d4h16a_ : (LYS10) (HIS82) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d1nj1a1 : (GLN296) (GLY357) [view usage] : c.51.1.1 |Anticodon-binding domain-like |Class II aaRS ABD-related |Anticodon-binding domain of Class II aaRS |Prolyl-tRNA synthetase (ProRS) domain |Methanothermobacter thermautotrophicus [TaxId: 145262]
d1js1x1 : (LYS37) (PHE115) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Transcarbamylase-like protein |Bacteroides fragilis [TaxId: 817]
d4h15a_ : (LYS10) (HIS82) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d2dj5a_ : (ARG2) (PRO66) [view usage] : c.92.1.3 |Chelatase-like |Chelatase |CbiX-like |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d4mrqa1 : (CYS50) (LEU105) [view usage] : c.84.1.0 |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1di0e_ : (PHE13) (GLY84) [view usage] : c.16.1.1 |Lumazine synthase |Lumazine synthase |Lumazine synthase |Lumazine synthase |Brucella abortus [TaxId: 235]
d2d00a1 : (MET6) (ASP53) [view usage] : c.149.1.1 |AtpF-like |AtpF-like |AtpF-like |V-type ATP synthase subunit F, AtpF |Thermus thermophilus [TaxId: 274]
d1di0a_ : (PHE13) (GLY84) [view usage] : c.16.1.1 |Lumazine synthase |Lumazine synthase |Lumazine synthase |Lumazine synthase |Brucella abortus [TaxId: 235]
d1nj8a1 : (GLN280) (GLY340) [view usage] : c.51.1.1 |Anticodon-binding domain-like |Class II aaRS ABD-related |Anticodon-binding domain of Class II aaRS |Prolyl-tRNA synthetase (ProRS) domain |Methanocaldococcus jannaschii [TaxId: 2190]
d1v95a_ : (ASP10) (THR68) [view usage] : c.51.1.1 |Anticodon-binding domain-like |Class II aaRS ABD-related |Anticodon-binding domain of Class II aaRS |Nuclear receptor coactivator 5 (KIAA1637) |Human (Homo sapiens) [TaxId: 9606]
d1wyub_ : (ARG157) (THR210) [view usage] : c.67.1.7 |PLP-dependent transferase-like |PLP-dependent transferases |Glycine dehydrogenase subunits (GDC-P) |Glycine dehydrogenase subunit 2 (P-protein) |Thermus thermophilus [TaxId: 274]
d3ugqa2 : (GLN349) (GLY422) [view usage] : c.51.1.0 |Anticodon-binding domain-like |Class II aaRS ABD-related |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d1k2yx1 : (VAL51) (LEU105) [view usage] : c.84.1.1 |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Phosphomannomutase/phosphoglucomutase |Pseudomonas aeruginosa [TaxId: 287]
d3miza_ : (ASN60) (THR124) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Rhizobium etli [TaxId: 347834]
d3mizb_ : (ASN60) (THR124) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Rhizobium etli [TaxId: 347834]
d2gkga_ : (LYS3) (VAL54) [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Myxococcus xanthus [TaxId: 34]
d3l8cb_ : (SER50) (GLU104) [view usage] : e.23.1.0 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |automated matches |automated matches |Streptococcus pyogenes [TaxId: 301450]
d1u8ua_ : (ASP2) (GLU69) [view usage] : c.23.10.5 |Flavodoxin-like |SGNH hydrolase |TAP-like |Thioesterase I, TAP |Escherichia coli [TaxId: 562]
d4c20a1 : (ILE2) (PRO86) [view usage] : c.85.1.0 |FucI/AraA N-terminal and middle domains |FucI/AraA N-terminal and middle domains |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 170187]
d1kfia1 : (LYS58) (THR124) [view usage] : c.84.1.1 |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Exocytosis-sensitive phosphoprotein, pp63/parafusin |Ciliate (Paramecium tetraurelia) [TaxId: 5888]
d1kfqa1 : (LYS58) (THR124) [view usage] : c.84.1.1 |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Exocytosis-sensitive phosphoprotein, pp63/parafusin |Ciliate (Paramecium tetraurelia) [TaxId: 5888]
d1c47a1 : (ALA54) (THR114) [view usage] : c.84.1.1 |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Phosphoglucomutase |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.67, c.94, c.2, c.56, c.92, c.93, c.23, c.85, e.23, c.78, c.53, c.51, c.16, c.30, c.149, c.84, c.103