Tableau information
Concept source: d4npcb_ amino acid (a.a.) range (LYS17)(VAL68)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS17) (GLY23) E1
(ILE28) (GLY40) H2
(LYS42) (ILE48) E3
(ASP51) (GLY61) H4
(ASN63) (VAL68) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -165.9° H2
E3 -16.4° -165.6° E3
H4 139.2° -33.2° 155.5° H4
E5 -37.0° 151.6° -21.1° 174.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2q1wa_ : (LYS3) (GLU52) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Bordetella bronchiseptica [TaxId: 518]
d1chda_ : (GLU156) (GLU213) [view usage] : c.40.1.1 |Methylesterase CheB, C-terminal domain |Methylesterase CheB, C-terminal domain |Methylesterase CheB, C-terminal domain |Methylesterase CheB, C-terminal domain |Salmonella typhimurium [TaxId: 90371]
d3wgka1 : (LEU14) (GLN60) [view usage] : c.32.1.1 |Tubulin nucleotide-binding domain-like |Tubulin nucleotide-binding domain-like |Tubulin, GTPase domain |Cell-division protein FtsZ |Staphylococcus aureus [TaxId: 1280]
d2d2fa_ : (THR163) (ASP219) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2rhha1 : (ALA12) (GLY62) [view usage] : c.32.1.1 |Tubulin nucleotide-binding domain-like |Tubulin nucleotide-binding domain-like |Tubulin, GTPase domain |Cell-division protein FtsZ |Bacillus subtilis [TaxId: 1423]
d2acvb_ : (LYS8) (ASP73) [view usage] : c.87.1.10 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |UDPGT-like |Triterpene UDP-glucosyl transferase UGT71G1 |Medicago truncatula [TaxId: 3880]
d2b1lb_ : (LYS69) (ASP129) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Escherichia coli [TaxId: 562]
d1xdoa4 : (SER531) (VAL586) [view usage] : d.136.1.4 |Phospholipase D/nuclease |Phospholipase D/nuclease |Polyphosphate kinase C-terminal domain |Polyphosphate kinase, PPK |Escherichia coli [TaxId: 562]
d1j3la_ : (ARG34) (GLY93) [view usage] : c.8.7.1 |The "swivelling" beta/beta/alpha domain |RraA-like |RraA-like |Demethylmenaquinone methyltransferase |Thermus thermophilus [TaxId: 274]
d3of2a_ : (ARG9) (GLN66) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Enoyl-ACP reductase |Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
d2f5tx2 : (ALA110) (ILE165) [view usage] : d.136.1.5 |Phospholipase D/nuclease |Phospholipase D/nuclease |TrmB middle domain-like |Transcriptional regulator TrmB |Thermococcus litoralis [TaxId: 2265]
d2e55a_ : (ILE123) (GLY179) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Aquifex aeolicus [TaxId: 63363]
d2r6r11 : (CYS8) (GLY58) [view usage] : c.32.1.1 |Tubulin nucleotide-binding domain-like |Tubulin nucleotide-binding domain-like |Tubulin, GTPase domain |Cell-division protein FtsZ |Aquifex aeolicus [TaxId: 224324]
d1sowa1 : (LYS21) (ALA81) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Toxoplasma gondii [TaxId: 5811]
d2ntva_ : (ARG9) (ASP64) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Enoyl-ACP reductase |Mycobacterium leprae [TaxId: 1769]
d1cdoa2 : (SER194) (ASN243) [view usage] : c.2.1.1 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Alcohol dehydrogenase-like, C-terminal domain |Alcohol dehydrogenase |Cod (Gadus callarias) [TaxId: 8053]
d1tpfa_ : (GLN5) (ALA64) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d3u2wa_ : (PHE6) (ASP62) [view usage] : c.68.1.14 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Glycogenin |Glycogenin |Human (Homo sapiens) [TaxId: 9606]
d1nkva_ : (THR38) (HIS92) [view usage] : c.66.1.21 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Hypothetical Protein YjhP |Hypothetical Protein YjhP |Escherichia coli [TaxId: 562]
d3t8ja_ : (MET1) (PRO62) [view usage] : c.70.1.0 |Nucleoside hydrolase |Nucleoside hydrolase |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 273057]
d1k92a1 : (GLN11) (CYS72) [view usage] : c.26.2.1 |Adenine nucleotide alpha hydrolase-like |Adenine nucleotide alpha hydrolases-like |N-type ATP pyrophosphatases |Argininosuccinate synthetase, N-terminal domain |Escherichia coli [TaxId: 562]
d1rlua1 : (VAL10) (ASP57) [view usage] : c.32.1.1 |Tubulin nucleotide-binding domain-like |Tubulin nucleotide-binding domain-like |Tubulin, GTPase domain |Cell-division protein FtsZ |Mycobacterium tuberculosis [TaxId: 1773]
d2x0ia1 : (MET22) (GLY81) [view usage] : c.2.1.5 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |LDH N-terminal domain-like |Malate dehydrogenase |Archaeoglobus fulgidus [TaxId: 2234]
d1qnla_ : (ASP199) (ALA254) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Amide receptor/negative regulator of the amidase operon (AmiC) |Pseudomonas aeruginosa [TaxId: 287]
d1peaa_ : (ASP199) (ALA254) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Amide receptor/negative regulator of the amidase operon (AmiC) |Pseudomonas aeruginosa [TaxId: 287]
d3wgla1 : (ALA12) (GLY62) [view usage] : c.32.1.1 |Tubulin nucleotide-binding domain-like |Tubulin nucleotide-binding domain-like |Tubulin, GTPase domain |Cell-division protein FtsZ |Staphylococcus aureus [TaxId: 158878]
d3b9na_ : (VAL223) (GLY280) [view usage] : c.1.16.0 |TIM beta/alpha-barrel |Bacterial luciferase-like |automated matches |automated matches |Geobacillus thermodenitrificans [TaxId: 33940]
d1aoda_ : (ASN199) (ASP278) [view usage] : c.1.18.2 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Bacterial PLC |Phosphatidylinositol-specific phospholipase C |Listeria monocytogenes [TaxId: 1639]
d2cbna1 : (ASP58) (GLU120) [view usage] : d.157.1.7 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |RNase Z-like |Ribonuclease Z (RNase Z) |Escherichia coli [TaxId: 562]
d2b1la_ : (LYS69) (ASP129) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Escherichia coli [TaxId: 562]
d3nv8b_ : (HIS277) (ARG337) [view usage] : c.1.10.8 |TIM beta/alpha-barrel |Aldolase |Class-II DAHP synthetase |Probable DAHP synthetase AroG, phenylalanine-repressible |Mycobacterium tuberculosis [TaxId: 1773]
d2csua1 : (ASP66) (GLY126) [view usage] : c.2.1.8 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |CoA-binding domain |Acetate-CoA ligase alpha chain, AcdA, N-terminal domain |Pyrococcus horikoshii [TaxId: 53953]
d1o5ia_ : (LYS8) (ASP55) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |beta-keto acyl carrier protein reductase |Thermotoga maritima [TaxId: 2336]
d3riha_ : (ARG20) (GLY73) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
d1peua2 : (PHE179) (HIS260) [view usage] : c.7.1.2 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |R1 subunit of ribonucleotide reductase, C-terminal domain |R1 subunit of ribonucleotide reductase, C-terminal domain |Salmonella typhimurium [TaxId: 90371]
d2d0oa1 : (TYR131) (ASP183) [view usage] : c.8.6.1 |The "swivelling" beta/beta/alpha domain |Swiveling domain of dehydratase reactivase alpha subunit |Swiveling domain of dehydratase reactivase alpha subunit |Diol dehydratase-reactivating factor large subunit DdrA |Klebsiella oxytoca [TaxId: 571]
d1bhsa_ : (VAL4) (ARG67) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Human estrogenic 17beta-hydroxysteroid dehydrogenase |Human (Homo sapiens) [TaxId: 9606]
d3gvha1 : (ASN4) (ALA63) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Brucella melitensis [TaxId: 359391]
d1yzhb_ : (PRO40) (TRP94) [view usage] : c.66.1.53 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |TrmB-like |tRNA (guanine-N(7)-)-methyltransferase TrmB |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1ml1a_ : (GLN5) (ALA64) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1v6za2 : (VAL71) (LEU141) [view usage] : c.116.1.5 |alpha/beta knot |alpha/beta knot |YggJ C-terminal domain-like |Hypothetical protein TTHA0657 (TT1575) |Thermus thermophilus [TaxId: 274]
d4hp8b_ : (ARG10) (ALA66) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d1d2ia_ : (ASP89) (LEU170) [view usage] : c.52.1.5 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease BglII |Restriction endonuclease BglII |Bacillus subtilis [TaxId: 1423]
d1yzha1 : (PRO40) (TRP94) [view usage] : c.66.1.53 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |TrmB-like |tRNA (guanine-N(7)-)-methyltransferase TrmB |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1nbwa1 : (GLU131) (ASP185) [view usage] : c.8.6.1 |The "swivelling" beta/beta/alpha domain |Swiveling domain of dehydratase reactivase alpha subunit |Swiveling domain of dehydratase reactivase alpha subunit |Swiveling domain of the glycerol dehydratase reactivase alpha subunit |Klebsiella pneumoniae [TaxId: 573]
d4egfa_ : (ALA19) (ILE73) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d4hp8a_ : (ARG10) (ALA66) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d1a2oa2 : (LYS157) (GLU213) [view usage] : c.40.1.1 |Methylesterase CheB, C-terminal domain |Methylesterase CheB, C-terminal domain |Methylesterase CheB, C-terminal domain |Methylesterase CheB, C-terminal domain |Salmonella typhimurium [TaxId: 90371]
d1yqga2 : (MSE1) (ALA50) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |Pyrroline-5-carboxylate reductase ProC |Neisseria meningitidis, serogroup B [TaxId: 487]
d1v6aa1 : (ASN21) (ASP80) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Carp (Cyprinus carpio) [TaxId: 7962]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.2, c.68, c.26, d.157, c.66, c.93, c.37, c.7, c.47, c.87, c.32, c.8, c.116, c.61, c.52, d.136, c.70, c.40