Tableau information
Concept source: d1gcia_ amino acid (a.a.) range (GLU89)(ALA152)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU89) (LYS94) E1
(SER103) (ASN116) H2
(HIS120) (LEU126) E3
(SER132) (GLY146) H4
(GLY146) (ALA152) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 157.1° H2
E3 -36.1° 166.1° E3
H4 164.9° 8.3° -157.8° H4
E5 -57.9° 144.2° -21.9° -135.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.5° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3fqaa_ : (ASN1183) (ASP1245) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |automated matches |Synechococcus elongatus [TaxId: 269084]
d1duia_ : (SER89) (ALA152) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Subtilisin |Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
d3fq8a_ : (ASN1183) (ASP1245) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |automated matches |Synechococcus elongatus [TaxId: 269084]
d4omca1 : (ARG220) (ALA292) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1w4ra1 : (GLN20) (PRO77) [view usage] : c.37.1.24 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Type II thymidine kinase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3d43b_ : (ASP98) (ALA166) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |automated matches |Bacillus sphaericus [TaxId: 1421]
d4lw2c_ : (GLY134) (GLY197) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d4jyba_ : (ARG57) (GLY127) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Metallochaperone MeaB |Methylobacterium extorquens [TaxId: 408]
d1qs0a_ : (GLY176) (VAL240) [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |2-oxoisovalerate dehydrogenase (E1B), PP module |Pseudomonas putida [TaxId: 303]
d1w85c_ : (ASN136) (GLN200) [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |Pyruvate dehydrogenase E1-alpha, PdhA |Bacillus stearothermophilus [TaxId: 1422]
d2fi9a1 : (GLY43) (MET101) [view usage] : c.103.1.1 |MTH938-like |MTH938-like |MTH938-like |Hypothetical outer membrane protein BH05650 |Bartonella henselae [TaxId: 38323]
d1p8jh2 : (ARG220) (ALA292) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Furin, N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d3bs8a_ : (ASN178) (GLU241) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |automated matches |Bacillus subtilis [TaxId: 1423]
d1meea_ : (SER89) (ALA152) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Messentericopeptidase |Bacillus mesentericus [TaxId: 1408]
d2yyba_ : (ARG37) (LEU98) [view usage] : c.135.1.0 |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1p8ja2 : (ARG220) (ALA292) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Furin, N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d3exec_ : (ASN130) (GLU194) [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |E1-beta subunit of pyruvate dehydrogenase (PP module) |Human (Homo sapiens) [TaxId: 9606]
d3dvaa_ : (ASN136) (GLN200) [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |automated matches |Bacillus stearothermophilus [TaxId: 1422]
d2g0tb_ : (LYS158) (ILE209) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Hypothetical protein TM0796 |Thermotoga maritima [TaxId: 2336]
d1bh6a_ : (SER89) (ALA152) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Subtilisin |Bacillus licheniformis [TaxId: 1402]
d1dpea_ : (ASP212) (PRO260) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Dipeptide-binding protein |Escherichia coli [TaxId: 562]
d1uqwa_ : (SER194) (SER240) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Hypothetical protein YliB |Escherichia coli [TaxId: 562]
d3aova_ : (ILE169) (ASP237) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 70601]
d3qtlb_ : (SER88) (ALA151) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |automated matches |Bacillus licheniformis [TaxId: 1402]
d2bp7a_ : (GLY176) (VAL240) [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |automated matches |Pseudomonas putida [TaxId: 303]
d1zjjb_ : (ILE65) (THR107) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 70601]
d1p8jf2 : (ARG220) (ALA292) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Furin, N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d4omcb1 : (ARG220) (ALA292) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3f7ma_ : (SER193) (ALA262) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |automated matches |Lecanicillium psalliotae [TaxId: 73499]
d3pzlb_ : (ILE116) (GLY180) [view usage] : c.42.1.0 |Arginase/deacetylase |Arginase/deacetylase |automated matches |automated matches |Thermoplasma volcanium [TaxId: 273116]
d1a2oa2 : (GLN244) (GLN304) [view usage] : c.40.1.1 |Methylesterase CheB, C-terminal domain |Methylesterase CheB, C-terminal domain |Methylesterase CheB, C-terminal domain |Methylesterase CheB, C-terminal domain |Salmonella typhimurium [TaxId: 90371]
d1e0da2 : (GLY311) (CYS368) [view usage] : c.59.1.1 |MurD-like peptide ligases, peptide-binding domain |MurD-like peptide ligases, peptide-binding domain |MurCDEF C-terminal domain |UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD |Escherichia coli [TaxId: 562]
d1sbta_ : (ALA89) (ALA152) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Subtilisin |Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
d1c3la_ : (SER89) (ALA152) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Subtilisin |Bacillus licheniformis [TaxId: 1402]
d2e7ua_ : (LEU177) (ASP238) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2gsaa_ : (ASN183) (ASP245) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Glutamate-1-semialdehyde aminomutase (aminotransferase) |Synechococcus sp., strain GR6 [TaxId: 1131]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.67, c.94, c.108, c.135, c.42, c.37, c.36, c.41, c.59, c.40, c.103