Tableau information
Concept source: d4napd_ amino acid (a.a.) range (PRO32)(SER97)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO32) (PHE40) E1
(CYS48) (ARG63) H2
(LYS65) (GLY73) E3
(MSE82) (GLY89) H4
(ASP92) (SER97) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 170.2° H2
E3 -19.4° -170.3° E3
H4 162.3° -22.7° 150.2° H4
E5 -26.3° 144.3° -45.1° -159.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4p0ib_ : (LYS29) (ALA95) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d4p0ia_ : (LYS29) (ALA95) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d3r6ua_ : (ILE14) (THR69) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Bacillus subtilis [TaxId: 535025]
d3tozc1 : (THR13) (MET74) [view usage] : c.58.1.0 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |automated matches |automated matches |Listeria monocytogenes [TaxId: 169963]
d4pp0b_ : (LYS29) (ALA95) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d3tnlb1 : (THR13) (MET74) [view usage] : c.58.1.0 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |automated matches |automated matches |Listeria monocytogenes [TaxId: 169963]
d4powa_ : (ILE31) (ALA95) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d4napc_ : (LEU35) (SER97) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Desulfovibrio alaskensis [TaxId: 207559]
d4nq8a_ : (THR26) (VAL89) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Bordetella bronchiseptica [TaxId: 257310]
d3ppna_ : (ILE34) (THR89) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d4g4pa_ : (TYR16) (GLY89) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Enterococcus faecalis [TaxId: 226185]
d1thma_ : (ALA32) (ARG102) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Thermitase |Thermoactinomyces vulgaris [TaxId: 2026]
d4pp0a_ : (LYS29) (ALA95) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d4pdha_ : (THR36) (SER99) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Polaromonas sp. [TaxId: 296591]
d1jwqa_ : (LYS2) (GLY85) [view usage] : c.56.5.6 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase CwlV |Paenibacillus polymyxa [TaxId: 1406]
d4pdda_ : (THR33) (THR96) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Polaromonas sp. [TaxId: 296591]
d3ppqa_ : (ILE34) (THR89) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Bacillus subtilis [TaxId: 535025]
d4pe3a_ : (HIS49) (THR112) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Rhodobacter sphaeroides [TaxId: 349101]
d1lafe_ : (GLN4) (SER69) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Lysine-,arginine-,ornithine-binding (LAO) protein |Salmonella typhimurium [TaxId: 90371]
d2vd2a_ : (PRO112) (ASP156) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1ixga_ : (LEU4) (ASP56) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Escherichia coli [TaxId: 562]
d3k4ue_ : (LEU5) (GLY69) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Wolinella succinogenes [TaxId: 844]
d4lata_ : (GLU31) (ASP86) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 170187]
d1a54a_ : (LEU4) (ASP56) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Escherichia coli [TaxId: 562]
d4htga1 : (SER134) (ALA182) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.94, c.56, c.41, c.58