Tableau information
Concept source: d1lafe_ amino acid (a.a.) range (VAL135)(LYS188)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL135) (ALA141) E1
(GLN143) (GLY153) H2
(ASP156) (GLN160) E3
(ASP161) (GLN172) H4
(GLU177) (LYS188) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 133.4° H2
E3 -53.4° -156.5° E3
H4 82.3° -51.3° 125.2° H4
E5 -94.0° 132.6° -50.1° -175.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2jlra1 : (LYS186) (PRO245) [view usage] : c.37.1.14 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RNA helicase |automated matches |Dengue virus 4 [TaxId: 408688]
d4p0ib_ : (GLN182) (GLY232) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d4p0ia_ : (GLN182) (GLY232) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d1yksa1 : (THR193) (GLN250) [view usage] : c.37.1.14 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RNA helicase |YFV helicase domain |Yellow fever virus [TaxId: 11089]
d3hv1a_ : (GLN179) (PRO226) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Streptococcus thermophilus [TaxId: 264199]
d4poxb_ : (GLN182) (PRO228) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d1ymfa1 : (THR193) (GLN250) [view usage] : c.37.1.14 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RNA helicase |YFV helicase domain |Yellow fever virus [TaxId: 11089]
d1tq1a_ : (ARG15) (PRO56) [view usage] : c.46.1.3 |Rhodanese/Cell cycle control phosphatase |Rhodanese/Cell cycle control phosphatase |Single-domain sulfurtransferase |Thiosulfate sulfurtransferase/Senescence-associated protein |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d4pp0b_ : (GLN182) (GLY232) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d1m8ka_ : (ARG72) (ALA121) [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |Nicotinamide mononucleotide (NMN) adenylyltransferase |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1vl1a_ : (LYS3) (LEU66) [view usage] : c.124.1.1 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |NagB-like |6-phosphogluconolactonase |Thermotoga maritima [TaxId: 2336]
d3cg3a_ : (VAL207) (PRO246) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d1nkta4 : (ARG401) (ALA462) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Translocation ATPase SecA, nucleotide-binding domains |Mycobacterium tuberculosis [TaxId: 1773]
d1mt5a_ : (GLY178) (THR257) [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Fatty acid amide hydrolase (oleamide hydrolase) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2jlsa1 : (LYS186) (PRO245) [view usage] : c.37.1.14 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RNA helicase |automated matches |Dengue virus 4 [TaxId: 408688]
d1ne7a_ : (MET1) (GLY76) [view usage] : c.124.1.1 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |NagB-like |Glucosamine 6-phosphate deaminase/isomerase NagB |Human (Homo sapiens) [TaxId: 9606]
d4ovqa_ : (ASN185) (LEU227) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Roseobacter denitrificans [TaxId: 375451]
d4powa_ : (GLN182) (PRO228) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d3axfa_ : (LEU146) (ASP189) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2hyic1 : (ILE79) (ILE141) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Probable ATP-dependent RNA helicase DDX48 |Human (Homo sapiens) [TaxId: 9606]
d1cd5a_ : (MET1) (ASP72) [view usage] : c.124.1.1 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |NagB-like |Glucosamine 6-phosphate deaminase/isomerase NagB |Escherichia coli [TaxId: 562]
d4r7ta_ : (MET1) (ASP72) [view usage] : c.124.1.1 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |NagB-like |automated matches |Vibrio cholerae [TaxId: 243277]
d1pbta_ : (LYS3) (LEU66) [view usage] : c.124.1.1 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |NagB-like |6-phosphogluconolactonase |Thermotoga maritima [TaxId: 2336]
d2onra_ : (ILE212) (PRO251) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Molybdate-binding protein, ModA |Archaeoglobus fulgidus [TaxId: 2234]
d1o7ta_ : (TYR168) (HIS218) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Ferric-binding protein FbpA |Neisseria gonorrhoeae [TaxId: 485]
d1ne7b_ : (MET1) (GLY76) [view usage] : c.124.1.1 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |NagB-like |Glucosamine 6-phosphate deaminase/isomerase NagB |Human (Homo sapiens) [TaxId: 9606]
d2jlqa1 : (LYS186) (PRO245) [view usage] : c.37.1.14 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RNA helicase |automated matches |Dengue virus 4 [TaxId: 408688]
d1amfa_ : (LEU146) (ASP189) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Molybdate-binding protein, ModA |Escherichia coli [TaxId: 562]
d2vyaa_ : (GLY178) (THR257) [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1lafe_ : (VAL135) (LYS188) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Lysine-,arginine-,ornithine-binding (LAO) protein |Salmonella typhimurium [TaxId: 90371]
d1d9ya_ : (GLY169) (HIS218) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Ferric-binding protein FbpA |Neisseria gonorrhoeae [TaxId: 485]
d2kbea_ : (MET134) (VAL197) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2jlua1 : (LYS186) (GLN243) [view usage] : c.37.1.14 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RNA helicase |automated matches |Dengue virus 4 [TaxId: 408688]
d4poxa_ : (GLN182) (PRO228) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.94, c.26, c.117, c.124, c.37, c.46