Tableau information
Concept source: d1km0a_ amino acid (a.a.) range (ARG66)(THR124)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG66) (PHE71) E1
(PRO77) (GLY91) H2
(ASP93) (HIS98) E3
(ASP104) (MET116) H4
(ARG118) (THR124) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 148.5° H2
E3 -31.7° 153.1° E3
H4 150.5° -29.7° -175.5° H4
E5 -52.6° 128.5° -25.5° -155.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1tvnb_ : (ASN18) (PHE99) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Endoglucanase Cel5a |Pseudoalteromonas haloplanktis [TaxId: 228]
d4jkma3 : (PRO289) (THR354) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Clostridium perfringens [TaxId: 195102]
d1k4kd_ : (SER3) (GLU74) [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |Nicotinamide mononucleotide (NMN) adenylyltransferase |Escherichia coli [TaxId: 562]
d4jbeb_ : (GLY119) (ARG185) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Saccharomonospora viridis [TaxId: 471857]
d1jj2x_ : (GLU183) (ASN230) [view usage] : c.9.2.1 |Barstar-like |Ribosomal protein L32e |Ribosomal protein L32e |Ribosomal protein L32e |Haloarcula marismortui [TaxId: 2238]
d2hgjf1 : (GLY121) (PRO178) [view usage] : c.22.1.1 |Ribosomal protein L4 |Ribosomal protein L4 |Ribosomal protein L4 |Ribosomal protein L4 |Thermus thermophilus [TaxId: 274]
d1nw3a_ : (ASP156) (ALA214) [view usage] : c.66.1.31 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Catalytic, N-terminal domain of histone methyltransferase Dot1l |Catalytic, N-terminal domain of histone methyltransferase Dot1l |Human (Homo sapiens) [TaxId: 9606]
d2oqya2 : (LYS129) (SER191) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Oceanobacillus iheyensis [TaxId: 182710]
d1n5wc2 : (ASP7) (ARG55) [view usage] : d.145.1.3 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |CO dehydrogenase flavoprotein N-terminal domain-like |Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain |Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]
d1sfsa_ : (ILE5) (PHE68) [view usage] : c.1.8.8 |TIM beta/alpha-barrel |(Trans)glycosidases |1,4-beta-N-acetylmuraminidase |Unnamed hypothetical protein |Bacillus stearothermophilus [TaxId: 1422]
d3tqka_ : (VAL59) (GLU148) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Francisella tularensis [TaxId: 119856]
d3etda2 : (ASP320) (ILE368) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |automated matches |Cow (Bos taurus) [TaxId: 9913]
d2ebna_ : (GLY84) (TYR171) [view usage] : c.1.8.5 |TIM beta/alpha-barrel |(Trans)glycosidases |Type II chitinase |Endo-beta-N-acetylglucosaminidase |Flavobacterium meningosepticum, endoglycosidase F1 [TaxId: 238]
d1peza4 : (VAL16) (ASN139) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Bacillus circulans, different strains [TaxId: 1397]
d1w2bx_ : (GLU183) (ASN230) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Prokaryotic (50S subunit) |Haloarcula marismortui [TaxId: 2238]
d2feka_ : (ASN4) (GLN67) [view usage] : c.44.1.0 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d4oozb_ : (LYS36) (LEU131) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Cryptopygus antarcticus [TaxId: 187623]
d4toqa_ : (GLY1) (SER77) [view usage] : c.1.8.5 |TIM beta/alpha-barrel |(Trans)glycosidases |Type II chitinase |automated matches |Punica granatum [TaxId: 22663]
d1we5a4 : (PRO476) (LEU539) [view usage] : c.1.8.13 |TIM beta/alpha-barrel |(Trans)glycosidases |YicI catalytic domain-like |Putative glucosidase YicI, domain 2 |Escherichia coli [TaxId: 562]
d2yy8b_ : (MET1) (PHE62) [view usage] : c.116.1.0 |alpha/beta knot |alpha/beta knot |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d1jlra_ : (TRP159) (ALA217) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Uracil PRTase, Upp |Toxoplasma gondii [TaxId: 5811]
d2vhla2 : (GLY127) (GLY201) [view usage] : c.1.9.10 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain |N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain |Bacillus subtilis [TaxId: 1423]
d3d5ha_ : (LEU3) (GLY75) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Scadoxus multiflorus [TaxId: 82246]
d1smaa3 : (ASP323) (TYR377) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Maltogenic amylase, central domain |Thermus sp. [TaxId: 275]
d1wzaa2 : (THR33) (ILE131) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Bacterial alpha-amylase |Halothermothrix orenii [TaxId: 31909]
d1ezwa_ : (SER5) (PRO63) [view usage] : c.1.16.3 |TIM beta/alpha-barrel |Bacterial luciferase-like |F420 dependent oxidoreductases |Coenzyme F420 dependent tetrahydromethanopterin reductase |Methanopyrus kandleri [TaxId: 2320]
d1j93a_ : (PRO247) (GLY293) [view usage] : c.1.22.1 |TIM beta/alpha-barrel |UROD/MetE-like |Uroporphyrinogen decarboxylase, UROD |Uroporphyrinogen decarboxylase, UROD |Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]
d3fyya2 : (LYS129) (SER191) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Oceanobacillus iheyensis [TaxId: 221109]
d3gj4c_ : (CYS85) (ASP148) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Ran |Human (Homo sapiens) [TaxId: 9606]
d1ydhb_ : (ARG10) (ILE72) [view usage] : c.129.1.1 |MCP/YpsA-like |MCP/YpsA-like |MoCo carrier protein-like |Hypothetical protein At5g11950 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1ztvb_ : (PHE105) (VAL167) [view usage] : c.1.32.1 |TIM beta/alpha-barrel |TM1631-like |TM1631-like |automated matches |Enterococcus faecalis [TaxId: 226185]
d1f07a_ : (LYS2) (PRO60) [view usage] : c.1.16.3 |TIM beta/alpha-barrel |Bacterial luciferase-like |F420 dependent oxidoreductases |Coenzyme F420 dependent tetrahydromethanopterin reductase |Methanobacterium thermoautotrophicum [TaxId: 145262]
d2cc0a1 : (GLY56) (TRP124) [view usage] : c.6.2.3 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |NodB-like polysaccharide deacetylase |Acetyl-xylan esterase |Streptomyces lividans [TaxId: 1916]
d2cc0b_ : (GLY56) (TRP124) [view usage] : c.6.2.3 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |NodB-like polysaccharide deacetylase |automated matches |Streptomyces lividans [TaxId: 1916]
d2vdca2 : (PHE853) (SER912) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Alpha subunit of glutamate synthase, central and FMN domains |Azospirillum brasilense [TaxId: 192]
d2gzxa_ : (LEU2) (ILE60) [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Staphylococcus aureus [TaxId: 196620]
d1ro7a_ : (LYS46) (GLY105) [view usage] : c.130.1.1 |Alpha-2,3/8-sialyltransferase CstII |Alpha-2,3/8-sialyltransferase CstII |Alpha-2,3/8-sialyltransferase CstII |Alpha-2,3/8-sialyltransferase CstII |Campylobacter jejuni [TaxId: 197]
d1weha_ : (MSE1) (THR63) [view usage] : c.129.1.1 |MCP/YpsA-like |MCP/YpsA-like |MoCo carrier protein-like |Hypothetical protein TT1887 (TTHA0294) |Thermus thermophilus [TaxId: 274]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.2, c.6, i.1, c.82, c.26, c.66, c.37, c.116, c.61, d.145, c.129, c.9, c.44, c.22, c.130