Tableau information
Concept source: d2q2ca_ amino acid (a.a.) range (VAL23)(SER85)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL23) (ASP28) E1
(GLY44) (GLY58) H2
(ASP60) (ASN65) E3
(GLY67) (SER77) H4
(ASP81) (SER85) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 170.3° H2
E3 -18.5° 161.9° E3
H4 -149.6° 23.7° 139.2° H4
E5 -29.9° 148.1° -48.1° -153.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1iz1b2 : (SER94) (SER146) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |LysR-type regulatory protein CbnR |Ralstonia eutropha [TaxId: 106590]
d4kr5a_ : (ASP260) (GLY326) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Lactococcus lactis [TaxId: 272623]
d2v84a_ : (ASP7) (SER62) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Treponema pallidum [TaxId: 243276]
d3mpka_ : (VAL309) (ALA373) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Bordetella pertussis [TaxId: 257313]
d3ma2a_ : (ILE124) (PHE181) [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4poxb_ : (LYS29) (ALA95) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d4qrza_ : (LEU31) (ASP89) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Agrobacterium fabrum [TaxId: 176299]
d4oenb_ : (TYR269) (GLY333) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 637987]
d2hnaa_ : (ASP3) (SER54) [view usage] : c.23.5.0 |Flavodoxin-like |Flavoproteins |automated matches |automated matches |Escherichia coli [TaxId: 562]
d4eqba_ : (GLN35) (ILE88) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 525381]
d2z23a_ : (PHE361) (ARG413) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Yersinia pestis [TaxId: 214092]
d1quka_ : (ALA2) (ASP56) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Escherichia coli [TaxId: 562]
d4qsda_ : (VAL29) (ALA87) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Agrobacterium fabrum [TaxId: 176299]
d2hpgb_ : (TYR24) (ASN86) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Thermotoga maritima [TaxId: 2336]
d2y7rc_ : (VAL197) (THR244) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Burkholderia sp. [TaxId: 233098]
d1r9la_ : (ILE8) (VAL63) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Glycine betaine-binding periplasmic protein ProX |Escherichia coli [TaxId: 562]
d1twya_ : (SER28) (SER83) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |ABC transporter, periplasmic substrate-binding protein VCA0807 |Vibrio cholerae [TaxId: 666]
d4exlc_ : (GLU31) (ASP86) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 637987]
d4f3pa1 : (LYS26) (SER90) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 320372]
d2kqua_ : (LYS3) (CYS54) [view usage] : c.23.5.1 |Flavodoxin-like |Flavoproteins |Flavodoxin-related |automated matches |Anabaena sp. [TaxId: 1168]
d4exla_ : (GLU31) (ASP86) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 637987]
d3qgma_ : (LYS89) (THR147) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d2dvpa_ : (MET1) (LEU68) [view usage] : c.51.4.1 |Anticodon-binding domain-like |ITPase-like |ITPase (Ham1) |XTP pyrophosphatase |Pyrococcus horikoshii [TaxId: 53953]
d4exlb_ : (GLY30) (ASP86) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 637987]
d1edza2 : (LEU38) (PHE99) [view usage] : c.58.1.2 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |Tetrahydrofolate dehydrogenase/cyclohydrolase |Tetrahydrofolate dehydrogenase/cyclohydrolase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1qula_ : (LEU4) (ASP56) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Escherichia coli [TaxId: 562]
d4exld_ : (GLU31) (ASP86) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 637987]
d2pvua_ : (GLY17) (SER85) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Geobacillus stearothermophilus [TaxId: 1422]
d1ffvc2 : (GLU7) (ASN55) [view usage] : d.145.1.3 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |CO dehydrogenase flavoprotein N-terminal domain-like |Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain |Hydrogenophaga pseudoflava [TaxId: 47421]
d4la9b_ : (THR29) (GLY94) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Lactococcus lactis [TaxId: 272623]
d2b3xa2 : (PRO198) (VAL238) [view usage] : c.83.1.1 |Aconitase iron-sulfur domain |Aconitase iron-sulfur domain |Aconitase iron-sulfur domain |Iron-responsive element binding protein 1, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d4kpta_ : (THR29) (GLY94) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Lactococcus lactis [TaxId: 272623]
d4o7ma_ : (ILE36) (SER98) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Shewanella loihica [TaxId: 323850]
d4ecfa_ : (GLU33) (ASP88) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Lactobacillus brevis [TaxId: 387344]
d3ma2d_ : (ILE124) (PHE181) [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2q2ca_ : (VAL23) (SER85) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Geobacillus stearothermophilus [TaxId: 1422]
d4la9a_ : (THR28) (GLY94) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Lactococcus lactis [TaxId: 272623]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.94, c.108, d.92, c.23, c.51, d.145, c.58, c.83