Tableau information
Concept source: d2pocb_ amino acid (a.a.) range (LYS568)(THR624)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS568) (GLY574) E1
(GLN578) (TYR594) H2
(MET595) (LEU601) E3
(GLY608) (VAL613) H4
(PRO618) (THR624) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 163.0° H2
E3 -20.8° -171.8° E3
H4 -141.1° 48.4° -135.6° H4
E5 -16.6° 147.9° -37.2° -136.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.5° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3qfcb1 : (ASN82) (GLY144) [view usage] : c.23.5.0 |Flavodoxin-like |Flavoproteins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3zk8a_ : (LYS34) (ASN88) [view usage] : c.92.2.2 |Chelatase-like |"Helical backbone" metal receptor |TroA-like |automated matches |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d3zk7a_ : (LYS34) (ASN88) [view usage] : c.92.2.2 |Chelatase-like |"Helical backbone" metal receptor |TroA-like |automated matches |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2v4ma_ : (LYS556) (ARG613) [view usage] : c.80.1.0 |SIS domain |SIS domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2z5va_ : (GLU12) (SER77) [view usage] : c.23.2.0 |Flavodoxin-like |Toll/Interleukin receptor TIR domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3f6ra_ : (LYS3) (MET62) [view usage] : c.23.5.0 |Flavodoxin-like |Flavoproteins |automated matches |automated matches |Desulfovibrio desulfuricans [TaxId: 876]
d1amoa2 : (ASN79) (GLY141) [view usage] : c.23.5.2 |Flavodoxin-like |Flavoproteins |Cytochrome p450 reductase N-terminal domain-like |NADPH-cytochrome p450 reductase, N-terminal domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2m6ra_ : (MET1) (THR56) [view usage] : c.23.5.0 |Flavodoxin-like |Flavoproteins |automated matches |automated matches |Escherichia coli [TaxId: 469008]
d4h2db_ : (PRO4) (GLY62) [view usage] : c.23.5.0 |Flavodoxin-like |Flavoproteins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1vs6e1 : (LEU147) (ALA190) [view usage] : c.22.1.1 |Ribosomal protein L4 |Ribosomal protein L4 |Ribosomal protein L4 |Ribosomal protein L4 |Escherichia coli [TaxId: 562]
d4h2da_ : (PRO4) (GLY62) [view usage] : c.23.5.0 |Flavodoxin-like |Flavoproteins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3udoa_ : (LYS182) (CYS239) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Campylobacter jejuni [TaxId: 197]
d1ml4a2 : (GLU183) (ARG229) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Aspartate carbamoyltransferase catalytic subunit |Pyrococcus abyssi [TaxId: 29292]
d1iz1a2 : (GLY91) (ARG147) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |LysR-type regulatory protein CbnR |Ralstonia eutropha [TaxId: 106590]
d3p2oa2 : (ASP159) (ALA207) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Campylobacter jejuni [TaxId: 192222]
d4k3vb_ : (LYS17) (ASN71) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Staphylococcus aureus [TaxId: 869816]
d1psza_ : (LYS34) (LYS108) [view usage] : c.92.2.2 |Chelatase-like |"Helical backbone" metal receptor |TroA-like |Pneumococcal surface antigen PssA |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1j9za2 : (ASN79) (GLY141) [view usage] : c.23.5.2 |Flavodoxin-like |Flavoproteins |Cytochrome p450 reductase N-terminal domain-like |NADPH-cytochrome p450 reductase, N-terminal domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1ahna_ : (ILE3) (PRO55) [view usage] : c.23.5.1 |Flavodoxin-like |Flavoproteins |Flavodoxin-related |Flavodoxin |Escherichia coli [TaxId: 562]
d1gzhb2 : (LYS1873) (ASP1923) [view usage] : c.15.1.4 |BRCT domain |BRCT domain |53BP1 |53BP1 |Human (Homo sapiens) [TaxId: 9606]
d2lxna_ : (MET1) (GLY51) [view usage] : c.23.16.1 |Flavodoxin-like |Class I glutamine amidotransferase-like |Class I glutamine amidotransferases (GAT) |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d1j9ea_ : (ALA2) (GLY61) [view usage] : c.23.5.1 |Flavodoxin-like |Flavoproteins |Flavodoxin-related |Flavodoxin |Desulfovibrio vulgaris [TaxId: 881]
d3r7da2 : (LEU148) (ARG211) [view usage] : c.78.1.0 |ATC-like |Aspartate/ornithine carbamoyltransferase |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1gdta2 : (LEU3) (LYS64) [view usage] : c.53.1.1 |Resolvase-like |Resolvase-like |gamma,delta resolvase, catalytic domain |gamma,delta resolvase, catalytic domain |Escherichia coli [TaxId: 562]
d3zk9a_ : (LYS34) (ASN88) [view usage] : c.92.2.2 |Chelatase-like |"Helical backbone" metal receptor |TroA-like |automated matches |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1j9zb2 : (ASN79) (GLY141) [view usage] : c.23.5.2 |Flavodoxin-like |Flavoproteins |Cytochrome p450 reductase N-terminal domain-like |NADPH-cytochrome p450 reductase, N-terminal domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3pc7b_ : (GLY853) (GLY893) [view usage] : c.15.1.2 |BRCT domain |BRCT domain |DNA ligase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2i4rb_ : (HIS-3) (LYS52) [view usage] : c.149.1.1 |AtpF-like |AtpF-like |AtpF-like |V-type ATP synthase subunit F, AtpF |Archaeoglobus fulgidus [TaxId: 2234]
d4nn3a_ : (LYS28) (ALA93) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Desulfovibrio salexigens [TaxId: 526222]
d4a17c_ : (LYS207) (THR259) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d3qfrb1 : (ASN82) (MET140) [view usage] : c.23.5.0 |Flavodoxin-like |Flavoproteins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2qfyb_ : (ASN208) (LYS272) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1al3a_ : (GLY93) (ALA148) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Cofactor-binding fragment of LysR-type protein CysB |Klebsiella aerogenes [TaxId: 28451]
d4utpa_ : (LYS34) (ASN88) [view usage] : c.92.2.2 |Chelatase-like |"Helical backbone" metal receptor |TroA-like |automated matches |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1ixca2 : (GLY91) (ARG147) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |LysR-type regulatory protein CbnR |Ralstonia eutropha [TaxId: 106590]
d2gqka_ : (PRO194) (ASP251) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3u5ec_ : (PRO205) (THR251) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d2i4ra1 : (LEU4) (MSE51) [view usage] : c.149.1.1 |AtpF-like |AtpF-like |AtpF-like |V-type ATP synthase subunit F, AtpF |Archaeoglobus fulgidus [TaxId: 2234]
d3j39c_ : (ARG204) (THR256) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d1bvyf_ : (PRO481) (ASN537) [view usage] : c.23.5.1 |Flavodoxin-like |Flavoproteins |Flavodoxin-related |FMN-binding domain of the cytochrome P450bm-3 |Bacillus megaterium [TaxId: 1404]
d1k0fa_ : (PRO34) (ASN89) [view usage] : c.92.2.2 |Chelatase-like |"Helical backbone" metal receptor |TroA-like |Periplasmic zinc binding protein TroA |Treponema pallidum [TaxId: 160]
d3blxi_ : (ARG17) (THR83) [view usage] : c.77.1.0 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2r48a1 : (LEU4) (ALA63) [view usage] : c.44.2.2 |Phosphotyrosine protein phosphatases I-like |PTS system IIB component-like |PTS system, Fructose specific IIB subunit-like |Mannose-specific enzyme IIBCA component ManP, N-terminal domain |Bacillus subtilis [TaxId: 1423]
d4jxda_ : (MSE1) (THR64) [view usage] : c.44.2.0 |Phosphotyrosine protein phosphatases I-like |PTS system IIB component-like |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d1s1id_ : (LEU205) (THR250) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1no5a_ : (LEU47) (ILE101) [view usage] : d.218.1.5 |Nucleotidyltransferase |Nucleotidyltransferase |Catalytic subunit of bi-partite nucleotidyltransferase |Hypothetical protein HI0073 |Haemophilus influenzae [TaxId: 727]
d3l07a2 : (TYR160) (ALA208) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Francisella tularensis [TaxId: 177416]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.94, c.2, i.1, c.92, c.80, c.77, c.23, c.47, c.78, c.53, d.218, c.44, c.15, c.149, c.22