Tableau information
Concept source: d1usoa_ amino acid (a.a.) range (VAL13)(LEU77)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL13) (PRO19) E1
(PHE21) (GLU38) H2
(ASN39) (TRP48) E3
(ARG50) (TRP56) E4
(ASP67) (LEU77) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 142.7° H2
E3 -40.9° -175.2° E3
E4 161.7° -19.2° 156.8° E4
H5 13.7° 138.5° -45.9° 156.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1p6ta1 : (GLU4) (GLY56) [view usage] : d.58.17.1 |Ferredoxin-like |HMA, heavy metal-associated domain |HMA, heavy metal-associated domain |Potential copper-translocating P-type ATPase CopA (YvgX) |Bacillus subtilis [TaxId: 1423]
d1wdta4 : (VAL570) (ALA628) [view usage] : d.58.11.1 |Ferredoxin-like |EF-G C-terminal domain-like |EF-G/eEF-2 domains III and V |Elongation factor G (EF-G) |Thermus thermophilus, EF-G-2 [TaxId: 274]
d1usob_ : (VAL13) (LEU77) [view usage] : d.74.1.1 |DCoH-like |PCD-like |PCD-like |Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) |Thermus thermophilus [TaxId: 274]
d4p2fa_ : (SER251) (LEU333) [view usage] : d.58.29.0 |Ferredoxin-like |Nucleotide cyclase |automated matches |automated matches |Mycobacterium tuberculosis
d1usoa_ : (VAL13) (LEU77) [view usage] : d.74.1.1 |DCoH-like |PCD-like |PCD-like |Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) |Thermus thermophilus [TaxId: 274]
d1h1cd_ : (ASN282) (LYS335) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Histidinol-phosphate aminotransferase HisC |Thermotoga maritima [TaxId: 2336]
d1orda2 : (PHE496) (ASP569) [view usage] : c.67.1.5 |PLP-dependent transferase-like |PLP-dependent transferases |Ornithine decarboxylase major domain |Ornithine decarboxylase major domain |Lactobacillus sp., strain 30a [TaxId: 1591]
d1wytb1 : (HIS375) (LYS440) [view usage] : c.67.1.7 |PLP-dependent transferase-like |PLP-dependent transferases |Glycine dehydrogenase subunits (GDC-P) |Glycine dehydrogenase subunit 2 (P-protein) |Thermus thermophilus [TaxId: 274]
d4axja_ : (LEU7) (ALA58) [view usage] : d.58.56.0 |Ferredoxin-like |CcmK-like |automated matches |automated matches |Clostridium difficile [TaxId: 272563]
d2f8ja_ : (ASN282) (PHE334) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Histidinol-phosphate aminotransferase HisC |Thermotoga maritima [TaxId: 2336]
d1dara4 : (ILE601) (PHE653) [view usage] : d.58.11.1 |Ferredoxin-like |EF-G C-terminal domain-like |EF-G/eEF-2 domains III and V |Elongation factor G (EF-G) |Thermus thermophilus [TaxId: 274]
d2hrxa1 : (SER87) (VAL129) [view usage] : d.310.1.1 |VC0467-like |VC0467-like |VC0467-like |Hypothetical protein DIP2367 |Corynebacterium diphtheriae [TaxId: 1717]
d2ctfa1 : (PHE26) (ARG96) [view usage] : d.51.1.1 |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |Vigilin |Human (Homo sapiens) [TaxId: 9606]
d2hiyd_ : (ARG99) (THR148) [view usage] : d.356.1.1 |SP0830-like |SP0830-like |SP0830-like |Hypothetical protein SP0830 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1v5ib1 : (PHE5) (GLN60) [view usage] : d.58.3.2 |Ferredoxin-like |Protease propeptides/inhibitors |Subtilase propeptides/inhibitors |Proteinase A inhibitor 1, POIA1 |Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
d1ttwa_ : (GLU47) (LEU119) [view usage] : d.198.1.1 |Secretion chaperone-like |Type III secretory system chaperone-like |Type III secretory system chaperone |Putative YopH chaperone SycH |Yersinia pestis [TaxId: 632]
d1l2wb_ : (PRO52) (LEU117) [view usage] : d.198.1.1 |Secretion chaperone-like |Type III secretory system chaperone-like |Type III secretory system chaperone |YopE chaperone SycE |Yersinia pestis [TaxId: 632]
d1ijba_ : (ASP514) (VAL584) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |von Willebrand factor A1 domain, vWA1 |Human (Homo sapiens) [TaxId: 9606]
d3q2sc_ : (ILE81) (LEU143) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4c45a_ : (ALA34) (VAL104) [view usage] : d.74.1.1 |DCoH-like |PCD-like |PCD-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1kafe_ : (MET160) (LEU211) [view usage] : d.199.1.1 |MotA C-terminal domain-like |DNA-binding C-terminal domain of the transcription factor MotA |DNA-binding C-terminal domain of the transcription factor MotA |DNA-binding C-terminal domain of the transcription factor MotA |Bacteriophage T4 [TaxId: 10665]
d1rzwa_ : (VAL51) (GLY109) [view usage] : c.131.1.1 |Peptidyl-tRNA hydrolase II |Peptidyl-tRNA hydrolase II |Peptidyl-tRNA hydrolase II |Hypothetical protein AF2095 |Archaeoglobus fulgidus [TaxId: 2234]
d3mpwa_ : (LEU4) (ALA54) [view usage] : d.58.56.0 |Ferredoxin-like |CcmK-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1spbp_ : (TYR10) (ASP62) [view usage] : d.58.3.2 |Ferredoxin-like |Protease propeptides/inhibitors |Subtilase propeptides/inhibitors |Subtilisin prosegment |Bacillus amyloliquefaciens [TaxId: 1390]
d3cq5b_ : (ASN308) (ASN365) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Corynebacterium glutamicum
d2h9za1 : (CYS14) (GLN78) [view usage] : d.58.54.2 |Ferredoxin-like |YbeD/HP0495-like |HP0495-like |Hypothetical protein HP0495 |Helicobacter pylori [TaxId: 210]
d1qd1b2 : (PHE2181) (SER2261) [view usage] : d.58.34.1 |Ferredoxin-like |Formiminotransferase domain of formiminotransferase-cyclodeaminase. |Formiminotransferase domain of formiminotransferase-cyclodeaminase. |Formiminotransferase domain of formiminotransferase-cyclodeaminase. |Pig (Sus scrofa) [TaxId: 9823]
d2hiyb_ : (ARG99) (THR148) [view usage] : d.356.1.1 |SP0830-like |SP0830-like |SP0830-like |Hypothetical protein SP0830 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2hiyc_ : (ARG99) (THR148) [view usage] : d.356.1.1 |SP0830-like |SP0830-like |SP0830-like |Hypothetical protein SP0830 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.67, d.58, c.62, d.74, d.51, d.198, d.356, c.131, d.310, d.199