Tableau information
Concept source: d1afia_ amino acid (a.a.) range (VAL5)(GLY65)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL5) (PRO10) E1
(ALA16) (LYS27) H2
(SER32) (PHE38) E3
(ARG41) (THR46) E4
(SER53) (GLY65) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 143.2° H2
E3 -38.0° 163.8° E3
E4 160.0° -24.1° 161.2° E4
H5 -27.4° 134.4° -55.8° 137.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1qm9a2 : (PRO119) (ASN180) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Polypyrimidine tract-binding protein |Human (Homo sapiens) [TaxId: 9606]
d1nm2a2 : (GLY136) (GLU182) [view usage] : d.58.23.1 |Ferredoxin-like |Probable ACP-binding domain of malonyl-CoA ACP transacylase |Probable ACP-binding domain of malonyl-CoA ACP transacylase |Probable ACP-binding domain of malonyl-CoA ACP transacylase |Streptomyces coelicolor A3(2) [TaxId: 100226]
d1xxac_ : (VAL96) (ASP153) [view usage] : d.74.2.1 |DCoH-like |C-terminal domain of arginine repressor |C-terminal domain of arginine repressor |C-terminal domain of arginine repressor |Escherichia coli [TaxId: 562]
d2a6oa_ : (TYR15) (ALA84) [view usage] : d.58.57.1 |Ferredoxin-like |Transposase IS200-like |Transposase IS200-like |ISHP608 transposase |Helicobacter pylori [TaxId: 210]
d1gupb2 : (GLU232) (ALA337) [view usage] : d.13.1.2 |HIT-like |HIT-like |Hexose-1-phosphate uridylyltransferase |Galactose-1-phosphate uridylyltransferase |Escherichia coli [TaxId: 562]
d3lgnb_ : (HIS0) (SER69) [view usage] : d.58.4.5 |Ferredoxin-like |Dimeric alpha+beta barrel |PG130-like |Hypothetical protein PG130 (SAV0165) |Staphylococcus aureus [TaxId: 1280]
d2g7ja1 : (ALA48) (GLY111) [view usage] : d.198.5.1 |Secretion chaperone-like |YgaC/TfoX-N like |YgaC-like |Putative cytoplasmic protein YgaC |Salmonella typhimurium [TaxId: 90371]
d4m5ga_ : (MET0) (ASN71) [view usage] : d.58.30.1 |Ferredoxin-like |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2km8b_ : (ARG26) (ASN88) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2ropa1 : (VAL20) (LEU81) [view usage] : d.58.17.0 |Ferredoxin-like |HMA, heavy metal-associated domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1gh8a_ : (GLY2) (SER72) [view usage] : d.58.12.1 |Ferredoxin-like |eEF-1beta-like |eEF-1beta-like |aEF-1beta |Methanobacterium thermoautotrophicum [TaxId: 145262]
d2eb0b_ : (GLU259) (ASN306) [view usage] : c.107.1.0 |DHH phosphoesterases |DHH phosphoesterases |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d2gepa1 : (LEU81) (GLY141) [view usage] : d.58.36.1 |Ferredoxin-like |Nitrite/Sulfite reductase N-terminal domain-like |Duplicated SiR/NiR-like domains 1 and 3 |Sulfite reductase, domains 1 and 3 |Escherichia coli [TaxId: 562]
d2zdpa_ : (MET1) (SER69) [view usage] : d.58.4.5 |Ferredoxin-like |Dimeric alpha+beta barrel |PG130-like |Hypothetical protein PG130 (SAV0165) |Staphylococcus aureus [TaxId: 1280]
d3t2ca_ : (MET1) (LYS89) [view usage] : d.280.1.1 |Sulfolobus fructose-1,6-bisphosphatase-like |Sulfolobus fructose-1,6-bisphosphatase-like |Sulfolobus fructose-1,6-bisphosphatase-like |automated matches |Thermoproteus neutrophilus [TaxId: 444157]
d2op5a1 : (ALA8) (GLU85) [view usage] : d.58.4.22 |Ferredoxin-like |Dimeric alpha+beta barrel |Marine metagenome family DABB1 |Hypothetical protein GOS_7213774 |Environmental samples
d1zvpd2 : (ALA68) (GLU128) [view usage] : d.58.18.9 |Ferredoxin-like |ACT-like |VC0802-like |Hypothetical protein VC0802 |Vibrio cholerae [TaxId: 666]
d1uj5a2 : (VAL136) (ILE198) [view usage] : d.58.40.1 |Ferredoxin-like |D-ribose-5-phosphate isomerase (RpiA), lid domain |D-ribose-5-phosphate isomerase (RpiA), lid domain |D-ribose-5-phosphate isomerase (RpiA), lid domain |Thermus thermophilus [TaxId: 274]
d1xxaa_ : (VAL96) (LEU151) [view usage] : d.74.2.1 |DCoH-like |C-terminal domain of arginine repressor |C-terminal domain of arginine repressor |C-terminal domain of arginine repressor |Escherichia coli [TaxId: 562]
d1sqga2 : (PRO173) (ALA243) [view usage] : c.66.1.38 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |NOL1/NOP2/sun |Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain |Escherichia coli [TaxId: 562]
d2hmfa2 : (VAL404) (GLU465) [view usage] : d.58.18.10 |Ferredoxin-like |ACT-like |Aspartokinase allosteric domain-like |Aspartokinase |Methanococcus jannaschii [TaxId: 2190]
d3j6vj_ : (VAL78) (ARG162) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, mitochondrial (28S subunit) |Cow (Bos taurus) [TaxId: 9913]
d3t2da_ : (MET1) (ASP82) [view usage] : d.280.1.1 |Sulfolobus fructose-1,6-bisphosphatase-like |Sulfolobus fructose-1,6-bisphosphatase-like |Sulfolobus fructose-1,6-bisphosphatase-like |automated matches |Thermoproteus neutrophilus [TaxId: 444157]
d1wtba_ : (LYS182) (LYS243) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1a0ob_ : (PRO159) (VAL215) [view usage] : d.58.24.1 |Ferredoxin-like |CheY-binding domain of CheA |CheY-binding domain of CheA |CheY-binding domain of CheA |Escherichia coli [TaxId: 562]
d4c3ik_ : (ALA61) (MET142) [view usage] : d.74.3.0 |DCoH-like |RBP11-like subunits of RNA polymerase |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2ofhx_ : (PRO6) (GLY70) [view usage] : d.58.17.0 |Ferredoxin-like |HMA, heavy metal-associated domain |automated matches |automated matches |Synechocystis sp. [TaxId: 1148]
d1hxqb2 : (GLU232) (ALA337) [view usage] : d.13.1.2 |HIT-like |HIT-like |Hexose-1-phosphate uridylyltransferase |Galactose-1-phosphate uridylyltransferase |Escherichia coli [TaxId: 562]
d1nxia_ : (ALA37) (LEU104) [view usage] : d.58.47.1 |Ferredoxin-like |Hypothetical protein VC0424 |Hypothetical protein VC0424 |Hypothetical protein VC0424 |Vibrio cholerae [TaxId: 666]
d1s1hj_ : (ARG23) (THR107) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1b70b4 : (HIS690) (ARG775) [view usage] : d.58.13.1 |Ferredoxin-like |Anticodon-binding domain of PheRS |Anticodon-binding domain of PheRS |Phenylalanyl-tRNA synthetase |Thermus thermophilus [TaxId: 274]
d3dgpb_ : (ALA8) (LYS60) [view usage] : d.295.1.0 |TFB5-like |TFB5-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1uj4a2 : (VAL136) (ILE198) [view usage] : d.58.40.1 |Ferredoxin-like |D-ribose-5-phosphate isomerase (RpiA), lid domain |D-ribose-5-phosphate isomerase (RpiA), lid domain |D-ribose-5-phosphate isomerase (RpiA), lid domain |Thermus thermophilus [TaxId: 274]
d1r6va_ : (GLY40) (LEU92) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Fervidolysin |Fervidobacterium pennivorans [TaxId: 93466]
d1hq2a_ : (THR1) (GLY81) [view usage] : d.58.30.1 |Ferredoxin-like |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |Escherichia coli [TaxId: 562]
d1ks2a2 : (LEU131) (ILE189) [view usage] : d.58.40.1 |Ferredoxin-like |D-ribose-5-phosphate isomerase (RpiA), lid domain |D-ribose-5-phosphate isomerase (RpiA), lid domain |D-ribose-5-phosphate isomerase (RpiA), lid domain |Escherichia coli [TaxId: 562]
d2wk5b3 : (ARG376) (ALA458) [view usage] : d.41.3.0 |alpha/beta-Hammerhead |Pyrimidine nucleoside phosphorylase C-terminal domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ki2a_ : (ARG2) (ALA58) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Helicobacter pylori [TaxId: 210]
d1s7ha_ : (ILE10) (SER72) [view usage] : d.58.48.2 |Ferredoxin-like |MTH1187/YkoF-like |Putative thiamin/HMP-binding protein YkoF |Putative thiamin/HMP-binding protein YkoF |Bacillus subtilis [TaxId: 1423]
d1hxpb2 : (GLU232) (ALA337) [view usage] : d.13.1.2 |HIT-like |HIT-like |Hexose-1-phosphate uridylyltransferase |Galactose-1-phosphate uridylyltransferase |Escherichia coli [TaxId: 562]
d1pqxa_ : (ASN13) (LEU84) [view usage] : d.267.1.1 |Hypothetical protein SAV1430 |Hypothetical protein SAV1430 |Hypothetical protein SAV1430 |Hypothetical protein SAV1430 |Staphylococcus aureus [TaxId: 1280]
d3mm5a1 : (GLU92) (ASN155) [view usage] : d.58.36.2 |Ferredoxin-like |Nitrite/Sulfite reductase N-terminal domain-like |DsrA/DsrB N-terminal-domain-like |Dissimilatory sulfite reductase subunit alpha, DsrA |Archaeoglobus fulgidus [TaxId: 2234]
d2mhna_ : (ARG13) (LEU73) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wg4a_ : (PHE16) (ARG68) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Splicing factor, arginine/serine-rich 9 (SFRS9) |Mouse (Mus musculus) [TaxId: 10090]
d2od4b_ : (MSE8) (ILE75) [view usage] : d.58.4.20 |Ferredoxin-like |Dimeric alpha+beta barrel |Marine metagenome family DABB2 |Hypothetical protein GOS_3280838 |Environmental samples
d2gv1a_ : (SER2) (LYS57) [view usage] : d.58.10.0 |Ferredoxin-like |Acylphosphatase/BLUF domain-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
d.58, i.1, c.66, c.107, c.41, d.41, d.74, d.13, d.198, d.280, d.295, d.267