Protein Concepts Dictionary

Tableau information

Concept source:  d2ebua_  amino acid (a.a.) range (LEU410)(GLY466)

nSSEs in this Concept: 5

String of secondary struct.elems. (SSEs) defining this concept: EHEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (LEU410)  (GLY416) E1
	  (GLU422)  (GLY434) H2
	  (GLY434)  (GLY439) E3
	  (ASN446)  (ARG452) E4
	  (GLN456)  (GLY466) H5

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                 
H2      176.8°   H2                          
E3      -35.0° -148.0°   E3                   
E4      -15.8°  161.0°  -50.6°   E4            
H5     -162.1°   19.0°  132.8° -161.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3qfcb1 :   (PHE171)  (GLY235)   [view usage] : c.23.5.0 |Flavodoxin-like |Flavoproteins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1y5ea1 :    (LYS12)   (LYS70)   [view usage] : c.57.1.1 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |MogA-like |MoaB |Bacillus cereus [TaxId: 1396]
 d2cbia3 :    (SER64)  (ASN121)   [view usage] : d.92.2.3 |Zincin-like |beta-N-acetylhexosaminidase-like domain |Hyaluronidase N-terminal domain-like |Hyaluronidase N-terminal domain |Clostridium perfringens [TaxId: 1502]
 d3f6ra_ :    (LYS87)  (LEU148)   [view usage] : c.23.5.0 |Flavodoxin-like |Flavoproteins |automated matches |automated matches |Desulfovibrio desulfuricans [TaxId: 876]
 d1amoa2 :   (PHE168)  (GLY232)   [view usage] : c.23.5.2 |Flavodoxin-like |Flavoproteins |Cytochrome p450 reductase N-terminal domain-like |NADPH-cytochrome p450 reductase, N-terminal domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d2b8na_ :    (ILE41)  (VAL108)   [view usage] : c.118.1.1 |GckA/TtuD-like |GckA/TtuD-like |GckA/TtuD-like |Putative glycerate kinase (hypothetical protein TM1585) |Thermotoga maritima [TaxId: 2336]
 d1t2vd1 :  (SER1651) (GLY1710)   [view usage] : c.15.1.3 |BRCT domain |BRCT domain |BRCT domain |Breast cancer associated protein, BRCA1 |Human (Homo sapiens) [TaxId: 9606]
 d3vpda1 :     (MET1)   (GLY73)   [view usage] : c.30.1.0 |PreATP-grasp domain |PreATP-grasp domain |automated matches |automated matches |Thermus thermophilus [TaxId: 274]
 d3cojd1 :  (MET1650) (GLY1710)   [view usage] : c.15.1.3 |BRCT domain |BRCT domain |BRCT domain |Breast cancer associated protein, BRCA1 |Human (Homo sapiens) [TaxId: 9606]
 d3pxaa1 :  (ARG1649) (GLY1710)   [view usage] : c.15.1.3 |BRCT domain |BRCT domain |BRCT domain |Breast cancer associated protein, BRCA1 |Human (Homo sapiens) [TaxId: 9606]
 d3cg0b_ :     (PRO8)   (ARG52)   [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Desulfovibrio desulfuricans [TaxId: 207559]
 d3pxba1 :  (ARG1649) (GLY1710)   [view usage] : c.15.1.3 |BRCT domain |BRCT domain |BRCT domain |Breast cancer associated protein, BRCA1 |Human (Homo sapiens) [TaxId: 9606]
 d1j9za2 :   (PHE168)  (PHE231)   [view usage] : c.23.5.2 |Flavodoxin-like |Flavoproteins |Cytochrome p450 reductase N-terminal domain-like |NADPH-cytochrome p450 reductase, N-terminal domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1y98a1 :  (MET1650) (GLY1710)   [view usage] : c.15.1.3 |BRCT domain |BRCT domain |BRCT domain |Breast cancer associated protein, BRCA1 |Human (Homo sapiens) [TaxId: 9606]
 d1tzba_ :    (PRO38)  (ARG105)   [view usage] : c.80.1.1 |SIS domain |SIS domain |double-SIS domain |Glucose-6-phosphate isomerase, conjectural |Pyrobaculum aerophilum [TaxId: 13773]
 d1j9zb2 :   (PHE168)  (GLY232)   [view usage] : c.23.5.2 |Flavodoxin-like |Flavoproteins |Cytochrome p450 reductase N-terminal domain-like |NADPH-cytochrome p450 reductase, N-terminal domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1tzbb_ :    (PRO38)  (ARG105)   [view usage] : c.80.1.1 |SIS domain |SIS domain |double-SIS domain |Glucose-6-phosphate isomerase, conjectural |Pyrobaculum aerophilum [TaxId: 13773]
 d1d4aa_ :   (LYS140)  (LEU211)   [view usage] : c.23.5.3 |Flavodoxin-like |Flavoproteins |Quinone reductase |NAD(P)H:quinone reductase |Human (Homo sapiens) [TaxId: 9606]
 d2ebua_ :   (LEU410)  (GLY466)   [view usage] : c.15.1.0 |BRCT domain |BRCT domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1azla_ :     (PRO2)   (SER77)   [view usage] : c.23.5.1 |Flavodoxin-like |Flavoproteins |Flavodoxin-related |Flavodoxin |Desulfovibrio vulgaris [TaxId: 881]
 d1l0ba1 :  (ASP1595) (GLY1656)   [view usage] : c.15.1.3 |BRCT domain |BRCT domain |BRCT domain |Breast cancer associated protein, BRCA1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d3ouza1 :     (LYS4)   (ASN63)   [view usage] : c.30.1.0 |PreATP-grasp domain |PreATP-grasp domain |automated matches |automated matches |Campylobacter jejuni [TaxId: 192222]
 d1uc8a1 :     (MET1)   (GLY73)   [view usage] : c.30.1.6 |PreATP-grasp domain |PreATP-grasp domain |Lysine biosynthesis enzyme LysX, N-terminal domain |Lysine biosynthesis enzyme LysX, N-terminal domain |Thermus thermophilus [TaxId: 274]
 d1h66a_ :   (LYS140)  (ASN213)   [view usage] : c.23.5.3 |Flavodoxin-like |Flavoproteins |Quinone reductase |NAD(P)H:quinone reductase |Human (Homo sapiens) [TaxId: 9606]
 d1ja1b2 :   (PHE168)  (GLY232)   [view usage] : c.23.5.2 |Flavodoxin-like |Flavoproteins |Cytochrome p450 reductase N-terminal domain-like |NADPH-cytochrome p450 reductase, N-terminal domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1t2vb1 :  (SER1651) (GLY1710)   [view usage] : c.15.1.3 |BRCT domain |BRCT domain |BRCT domain |Breast cancer associated protein, BRCA1 |Human (Homo sapiens) [TaxId: 9606]
 d1t15a1 :  (ARG1649) (GLY1710)   [view usage] : c.15.1.3 |BRCT domain |BRCT domain |BRCT domain |Breast cancer associated protein, BRCA1 |Human (Homo sapiens) [TaxId: 9606]
 d1j9ga_ :     (ALA2)   (LEU78)   [view usage] : c.23.5.1 |Flavodoxin-like |Flavoproteins |Flavodoxin-related |Flavodoxin |Desulfovibrio vulgaris [TaxId: 881]
 d1j9ga_ :    (LYS87)  (ILE148)   [view usage] : c.23.5.1 |Flavodoxin-like |Flavoproteins |Flavodoxin-related |Flavodoxin |Desulfovibrio vulgaris [TaxId: 881]
 d4jdpa_ :    (LYS89)  (ARG140)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 2234]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 c.108,    c.80,    d.92,    c.23,    c.57,    c.30,    c.15,   c.118