Tableau information
Concept source: d1gxta_ amino acid (a.a.) range (VAL9)(CYS65)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL9) (GLY15) E1
(PHE22) (LEU33) H2
(HIS36) (ASN41) E3
(GLY45) (ARG51) E4
(GLU55) (CYS65) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 144.2° H2
E3 -31.2° 169.8° E3
E4 158.4° -16.8° 170.3° E4
H5 -14.0° 135.8° -42.4° 146.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2f40a1 : (TRP3) (LEU58) [view usage] : i.11.1.1 |Computational models partly based on experimental data |Computational models partly based on experimental data |Computational models partly based on experimental data |Hypothetical protein PF1455 |Pyrococcus furiosus [TaxId: 2261]
d2vdca3 : (ILE128) (TYR192) [view usage] : d.153.1.1 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Class II glutamine amidotransferases |Alpha subunit of glutamate synthase, N-terminal domain |Azospirillum brasilense [TaxId: 192]
d1dy3a_ : (TYR4) (ASN71) [view usage] : d.58.30.1 |Ferredoxin-like |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |Escherichia coli [TaxId: 562]
d1iujb_ : (MET1) (SER68) [view usage] : d.58.4.5 |Ferredoxin-like |Dimeric alpha+beta barrel |PG130-like |Hypothetical protein TT1380 |Thermus thermophilus [TaxId: 274]
d4v1al_ : (ASN104) (GLY165) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d1fnxh2 : (ALA125) (LEU186) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Hu antigen C (Huc) |Mouse (Mus musculus) [TaxId: 10090]
d1wcmk_ : (ASN29) (GLN112) [view usage] : i.8.1.1 |RNA polymerase |RNA polymerase |RNA polymerase |Complete 12-subunit RNA polymerase II complex |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1e6vc_ : (ARG85) (LEU142) [view usage] : d.58.31.1 |Ferredoxin-like |Methyl-coenzyme M reductase subunits |Methyl-coenzyme M reductase gamma chain |Methyl-coenzyme M reductase gamma chain |Methanopyrus kandleri [TaxId: 2320]
d1kafa_ : (MET160) (LEU211) [view usage] : d.199.1.1 |MotA C-terminal domain-like |DNA-binding C-terminal domain of the transcription factor MotA |DNA-binding C-terminal domain of the transcription factor MotA |DNA-binding C-terminal domain of the transcription factor MotA |Bacteriophage T4 [TaxId: 10665]
d2adca1 : (SER337) (ASN395) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Polypyrimidine tract-binding protein |Human (Homo sapiens) [TaxId: 9606]
d1ir6a_ : (GLY365) (ALA419) [view usage] : c.107.1.2 |DHH phosphoesterases |DHH phosphoesterases |Exonuclease RecJ |Exonuclease RecJ |Thermus thermophilus [TaxId: 274]
d1iwga1 : (PRO41) (LEU118) [view usage] : d.58.44.1 |Ferredoxin-like |Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |Escherichia coli [TaxId: 562]
d3u5ej_ : (ASP11) (GLU88) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d1vhib_ : (VAL504) (LYS586) [view usage] : d.58.8.1 |Ferredoxin-like |Viral DNA-binding domain |Viral DNA-binding domain |Epstein barr virus nuclear antigen-1 (ebna1) |Epstein-Barr virus [TaxId: 10376]
d1v33a_ : (LEU92) (LEU162) [view usage] : d.264.1.1 |Prim-pol domain |Prim-pol domain |PriA-like |DNA primase |Pyrococcus horikoshii [TaxId: 53953]
d2zkqj1 : (ARG21) (SER103) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Dog (Canis familiaris) [TaxId: 9615]
d1lfpa_ : (GLY138) (GLY191) [view usage] : e.39.1.1 |YebC-like |YebC-like |YebC-like |Hypothetical protein aq1575 |Aquifex aeolicus [TaxId: 63363]
d1hbmc_ : (ARG81) (LEU138) [view usage] : d.58.31.1 |Ferredoxin-like |Methyl-coenzyme M reductase subunits |Methyl-coenzyme M reductase gamma chain |Methyl-coenzyme M reductase gamma chain |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1rzma_ : (MET1) (ALA50) [view usage] : c.1.10.4 |TIM beta/alpha-barrel |Aldolase |Class I DAHP synthetase |3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) |Thermotoga maritima [TaxId: 2336]
d2pgcc_ : (ASN5) (LYS77) [view usage] : d.58.4.23 |Ferredoxin-like |Dimeric alpha+beta barrel |Marine metagenome family DABB3 |Uncharacterized protein GOS_2596953 |Environmental samples
d1j27a_ : (ALA3) (ALA81) [view usage] : d.58.50.1 |Ferredoxin-like |Hypothetical protein TT1725 |Hypothetical protein TT1725 |Hypothetical protein TT1725 |Thermus thermophilus [TaxId: 274]
d2raqb_ : (ILE7) (GLY73) [view usage] : d.58.61.1 |Ferredoxin-like |MTH889-like |MTH889-like |Uncharacterized protein MTH889 |Methanobacterium thermoautotrophicum [TaxId: 145262]
d2q4ka_ : (HIS123) (ALA194) [view usage] : d.86.1.2 |eIF4e-like |eIF4e-like |BLES03-like |Basophilic leukemia expressed protein BLES03 |Human (Homo sapiens) [TaxId: 9606]
d3m1vc_ : (ARG81) (GLU139) [view usage] : d.58.31.1 |Ferredoxin-like |Methyl-coenzyme M reductase subunits |Methyl-coenzyme M reductase gamma chain |Methyl-coenzyme M reductase gamma chain |Methanobacterium thermoautotrophicum [TaxId: 145262]
d3q2sd_ : (ILE81) (LEU143) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2f06a1 : (VAL71) (LYS129) [view usage] : d.58.18.11 |Ferredoxin-like |ACT-like |BT0572-like |Hypothetical protein BT0572 |Bacteroides thetaiotaomicron [TaxId: 818]
d3b0ga1 : (GLY104) (GLY167) [view usage] : d.58.36.0 |Ferredoxin-like |Nitrite/Sulfite reductase N-terminal domain-like |automated matches |automated matches |Tobacco (Nicotiana tabacum) [TaxId: 4097]
d4a47a_ : (THR2) (GLY60) [view usage] : d.58.17.1 |Ferredoxin-like |HMA, heavy metal-associated domain |HMA, heavy metal-associated domain |automated matches |Synechocystis sp. [TaxId: 1148]
d2xmma_ : (THR2) (GLY60) [view usage] : d.58.17.1 |Ferredoxin-like |HMA, heavy metal-associated domain |HMA, heavy metal-associated domain |automated matches |Synechocystis sp. PCC 6803 [TaxId: 1148]
d2e7xa2 : (ASP62) (GLU117) [view usage] : d.58.4.0 |Ferredoxin-like |Dimeric alpha+beta barrel |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 111955]
d3k7rl_ : (LYS5) (LYS62) [view usage] : d.58.17.1 |Ferredoxin-like |HMA, heavy metal-associated domain |HMA, heavy metal-associated domain |ATX1 metallochaperone protein (ATOX1) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3erja_ : (VAL51) (GLY109) [view usage] : c.131.1.1 |Peptidyl-tRNA hydrolase II |Peptidyl-tRNA hydrolase II |Peptidyl-tRNA hydrolase II |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d1kafd_ : (MET160) (LEU211) [view usage] : d.199.1.1 |MotA C-terminal domain-like |DNA-binding C-terminal domain of the transcription factor MotA |DNA-binding C-terminal domain of the transcription factor MotA |DNA-binding C-terminal domain of the transcription factor MotA |Bacteriophage T4 [TaxId: 10665]
d3b0ha1 : (GLY104) (VAL166) [view usage] : d.58.36.0 |Ferredoxin-like |Nitrite/Sulfite reductase N-terminal domain-like |automated matches |automated matches |Tobacco (Nicotiana tabacum) [TaxId: 4097]
d3m2vc_ : (ARG81) (LEU138) [view usage] : d.58.31.1 |Ferredoxin-like |Methyl-coenzyme M reductase subunits |Methyl-coenzyme M reductase gamma chain |Methyl-coenzyme M reductase gamma chain |Methanobacterium thermoautotrophicum [TaxId: 145262]
d3hd2a_ : (TYR4) (GLY81) [view usage] : d.58.30.1 |Ferredoxin-like |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |Escherichia coli K-12 [TaxId: 83333]
d3b0hb1 : (GLY104) (GLY167) [view usage] : d.58.36.0 |Ferredoxin-like |Nitrite/Sulfite reductase N-terminal domain-like |automated matches |automated matches |Tobacco (Nicotiana tabacum) [TaxId: 4097]
d3zzyb_ : (ARG185) (LEU239) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1gxta_ : (VAL9) (CYS65) [view usage] : d.58.10.1 |Ferredoxin-like |Acylphosphatase/BLUF domain-like |Acylphosphatase-like |Hydrogenase maturation protein HypF N-terminal domain (HypF-ACP) |Escherichia coli [TaxId: 562]
d1vhia_ : (VAL504) (LYS586) [view usage] : d.58.8.1 |Ferredoxin-like |Viral DNA-binding domain |Viral DNA-binding domain |Epstein barr virus nuclear antigen-1 (ebna1) |Epstein-Barr virus [TaxId: 10376]
d2xmja_ : (THR2) (GLY60) [view usage] : d.58.17.1 |Ferredoxin-like |HMA, heavy metal-associated domain |HMA, heavy metal-associated domain |Copper chaperone |Synechocystis sp. PCC 6803, Scatx1 [TaxId: 1148]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, d.58, i.1, d.153, c.107, i.11, i.8, d.86, d.264, c.131, d.199, e.39