Tableau information
Concept source: d2ctja1 amino acid (a.a.) range (ASN15)(GLN87)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN15) (VAL21) E1
(PRO24) (GLY47) H2
(VAL49) (PRO54) E3
(ASP61) (GLY67) E4
(ASP71) (GLN87) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 154.1° H2
E3 -38.1° -166.9° E3
E4 162.5° -8.5° 158.6° E4
H5 -17.6° 143.0° -46.2° 149.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2eyqa6 : (GLY1085) (ALA1146) [view usage] : d.315.1.1 |TRCF domain-like |TRCF domain-like |TRCF domain |Transcription-repair coupling factor, TRCF, C-terminal domain |Escherichia coli [TaxId: 562]
d1m21a_ : (ASP448) (ARG522) [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Peptide amidase Pam |Stenotrophomonas maltophilia [TaxId: 40324]
d1lbva_ : (CYS186) (LEU250) [view usage] : e.7.1.1 |Carbohydrate phosphatase |Carbohydrate phosphatase |Inositol monophosphatase/fructose-1,6-bisphosphatase-like |Archaeal inositol monophosphatase/fructose-1,6-bisphosphatase |Archaeoglobus fulgidus [TaxId: 2234]
d1qapa2 : (ALA55) (GLY116) [view usage] : d.41.2.1 |alpha/beta-Hammerhead |Nicotinate/Quinolinate PRTase N-terminal domain-like |NadC N-terminal domain-like |Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain |Salmonella typhimurium [TaxId: 90371]
d2nqpd1 : (VAL136) (HIS217) [view usage] : d.265.1.1 |Pseudouridine synthase |Pseudouridine synthase |Pseudouridine synthase I TruA |Pseudouridine synthase I TruA |Escherichia coli [TaxId: 562]
d1zhva2 : (GLY62) (GLY123) [view usage] : d.58.18.8 |Ferredoxin-like |ACT-like |Atu0741-like |Hypothetical protein Atu0741 |Agrobacterium tumefaciens [TaxId: 358]
d1ytda2 : (VAL38) (ILE113) [view usage] : d.41.2.1 |alpha/beta-Hammerhead |Nicotinate/Quinolinate PRTase N-terminal domain-like |NadC N-terminal domain-like |Nicotinate phosphoribosyltransferase Ta1145 |Thermoplasma acidophilum [TaxId: 2303]
d1jyoa_ : (ILE45) (ILE123) [view usage] : d.198.1.1 |Secretion chaperone-like |Type III secretory system chaperone-like |Type III secretory system chaperone |Virulence effector SptP secretion chaperone SicP |Salmonella typhimurium [TaxId: 90371]
d1wjwa_ : (PRO14) (GLN95) [view usage] : d.129.2.1 |TBP-like |Phosphoglucomutase, C-terminal domain |Phosphoglucomutase, C-terminal domain |Phosphoacetylglucosamine mutase |Mouse (Mus musculus) [TaxId: 10090]
d1b6ra1 : (ASN278) (LEU339) [view usage] : b.84.2.1 |Barrel-sandwich hybrid |Rudiment single hybrid motif |BC C-terminal domain-like |N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), C-domain |Escherichia coli [TaxId: 562]
d2lqba_ : (ALA7) (MET68) [view usage] : d.58.17.0 |Ferredoxin-like |HMA, heavy metal-associated domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2qyca_ : (PHE4) (CYS74) [view usage] : d.58.4.0 |Ferredoxin-like |Dimeric alpha+beta barrel |automated matches |automated matches |Bordetella bronchiseptica [TaxId: 257310]
d2bbea_ : (VAL15) (LYS80) [view usage] : d.58.4.0 |Ferredoxin-like |Dimeric alpha+beta barrel |automated matches |automated matches |Shewanella oneidensis [TaxId: 211586]
d1jyaa_ : (ILE46) (LEU117) [view usage] : d.198.1.1 |Secretion chaperone-like |Type III secretory system chaperone-like |Type III secretory system chaperone |YopE chaperone SycE |Yersinia pestis [TaxId: 632]
d1jyab_ : (ILE46) (SER120) [view usage] : d.198.1.1 |Secretion chaperone-like |Type III secretory system chaperone-like |Type III secretory system chaperone |YopE chaperone SycE |Yersinia pestis [TaxId: 632]
d4ir8b_ : (GLN254) (ALA327) [view usage] : e.7.1.0 |Carbohydrate phosphatase |Carbohydrate phosphatase |automated matches |automated matches |Toxoplasma gondii [TaxId: 508771]
d1n5ba_ : (ILE46) (LEU117) [view usage] : d.198.1.1 |Secretion chaperone-like |Type III secretory system chaperone-like |Type III secretory system chaperone |YopE chaperone SycE |Yersinia enterocolitica [TaxId: 630]
d1q2la1 : (ALA548) (PHE625) [view usage] : d.185.1.1 |LuxS/MPP-like metallohydrolase |LuxS/MPP-like metallohydrolase |MPP-like |Protease III |Escherichia coli [TaxId: 562]
d1hi9a_ : (VAL218) (MET269) [view usage] : c.99.1.1 |Dipeptide transport protein |Dipeptide transport protein |Dipeptide transport protein |Zn-dependent D-aminopeptidase DppA |Bacillus subtilis [TaxId: 1423]
d2ebba_ : (ILE28) (MET97) [view usage] : d.74.1.0 |DCoH-like |PCD-like |automated matches |automated matches |Geobacillus kaustophilus [TaxId: 1462]
d2fmra_ : (PHE4) (GLU65) [view usage] : d.51.1.1 |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |Fragile X protein, KH1 |Human (Homo sapiens) [TaxId: 9606]
d3pajb1 : (SER55) (GLY115) [view usage] : d.41.2.0 |alpha/beta-Hammerhead |Nicotinate/Quinolinate PRTase N-terminal domain-like |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d2omoa1 : (TYR2) (THR68) [view usage] : d.58.4.11 |Ferredoxin-like |Dimeric alpha+beta barrel |PA3566-like |Hypothetical protein NE0621 |Nitrosomonas europaea [TaxId: 915]
d1dj0a_ : (THR137) (HIS217) [view usage] : d.265.1.1 |Pseudouridine synthase |Pseudouridine synthase |Pseudouridine synthase I TruA |Pseudouridine synthase I TruA |Escherichia coli [TaxId: 562]
d2ctja1 : (ASN15) (GLN87) [view usage] : d.51.1.1 |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |Vigilin |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
d.58, c.117, d.129, d.185, e.7, b.84, d.41, d.74, d.51, d.198, c.99, d.265, d.315