Protein Concepts Dictionary

Tableau information

Concept source:  d3omsa_  amino acid (a.a.) range (THR10)(ASP67)

nSSEs in this Concept: 5

String of secondary struct.elems. (SSEs) defining this concept: EHEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (THR10)   (GLU15) E1
	   (GLU19)   (PHE29) H2
	   (VAL35)   (TYR40) E3
	   (ILE52)   (PHE56) E4
	   (GLN61)   (ASP67) E5

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                 
H2      140.7°   H2                          
E3      -28.4° -168.2°   E3                   
E4      139.5°    1.8° -166.6°   E4            
E5      -19.8°  159.4°   -8.9°  157.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.7°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4jh1a_ :     (HIS7)   (GLU51)   [view usage] : d.32.1.0 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |automated matches |automated matches |Bacillus cereus [TaxId: 222523]
 d4jd1a_ :     (HIS7)   (ASP54)   [view usage] : d.32.1.0 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |automated matches |automated matches |Bacillus anthracis [TaxId: 198094]
 d1pyya1 :   (SER634)  (LEU689)   [view usage] : d.11.1.1 |Penicillin-binding protein 2x (pbp-2x), c-terminal domain |Penicillin-binding protein 2x (pbp-2x), c-terminal domain |Penicillin-binding protein 2x (pbp-2x), c-terminal domain |Penicillin-binding protein 2x (pbp-2x), c-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
 d1npbc_ :     (HIS7)   (TYR51)   [view usage] : d.32.1.2 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Antibiotic resistance proteins |Fosfomycin resistance protein A (FosA) |Serratia marcescens [TaxId: 615]
 d4ir0b_ :     (HIS7)   (ASP54)   [view usage] : d.32.1.0 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |automated matches |automated matches |Bacillus anthracis [TaxId: 198094]
 d3omsa_ :    (THR10)   (ASP67)   [view usage] : d.32.1.0 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |automated matches |automated matches |Bacillus cereus [TaxId: 226900]
 d1ewja_ :     (GLN4)   (ALA49)   [view usage] : d.32.1.2 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Antibiotic resistance proteins |Bleomycin resistance protein, BRP |Klebsiella pneumoniae [TaxId: 573]
 d1u7ia_ :     (PRO7)   (HIS67)   [view usage] : d.32.1.7 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |3-demethylubiquinone-9 3-methyltransferase |Hypothetical protein PA1358 |Pseudomonas aeruginosa [TaxId: 287]
 d1u7ib_ :     (PRO7)   (HIS67)   [view usage] : d.32.1.7 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |3-demethylubiquinone-9 3-methyltransferase |Hypothetical protein PA1358 |Pseudomonas aeruginosa [TaxId: 287]
 d1sp8a1 :    (HIS51)  (HIS107)   [view usage] : d.32.1.3 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Extradiol dioxygenases |4-hydroxyphenylpyruvate dioxygenase, HppD |Maize (Zea mays) [TaxId: 4577]
 d1npbb_ :     (HIS7)   (SER50)   [view usage] : d.32.1.2 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Antibiotic resistance proteins |Fosfomycin resistance protein A (FosA) |Serratia marcescens [TaxId: 615]
 d1npbd_ :     (HIS7)   (TYR51)   [view usage] : d.32.1.2 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Antibiotic resistance proteins |Fosfomycin resistance protein A (FosA) |Serratia marcescens [TaxId: 615]
 d1usyh_ :     (MET1)   (VAL44)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain |Thermotoga maritima [TaxId: 2336]
 d1sp8c1 :    (HIS51)  (HIS107)   [view usage] : d.32.1.3 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Extradiol dioxygenases |4-hydroxyphenylpyruvate dioxygenase, HppD |Maize (Zea mays) [TaxId: 4577]
 d1npba_ :     (HIS7)   (SER50)   [view usage] : d.32.1.2 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Antibiotic resistance proteins |Fosfomycin resistance protein A (FosA) |Serratia marcescens [TaxId: 615]
 d1usye_ :     (MET1)   (VAL44)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain |Thermotoga maritima [TaxId: 2336]
 d1lqka_ :     (HIS7)   (ARG51)   [view usage] : d.32.1.2 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Antibiotic resistance proteins |Fosfomycin resistance protein A (FosA) |Pseudomonas aeruginosa [TaxId: 287]
 d2c21a1 :    (HIS77)  (ASN123)   [view usage] : d.32.1.1 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase I (lactoylglutathione lyase) |Glyoxalase I (lactoylglutathione lyase) |Leishmania major [TaxId: 5664]
 d4ir0a_ :     (HIS7)   (VAL51)   [view usage] : d.32.1.0 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |automated matches |automated matches |Bacillus anthracis [TaxId: 198094]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.94,    d.32,    d.11