Tableau information
Concept source: d1mcww2 amino acid (a.a.) range (PRO117)(SER172)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO117) (PRO123) E1
(SER125) (GLN130) H2
(ASN132) (ASP142) E3
(ALA147) (LYS153) E4
(GLY162) (SER172) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -49.8° H2
E3 165.1° 145.1° E3
E4 -27.2° -56.0° 147.9° E4
E5 136.7° 147.6° -34.8° 148.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3djza_ : (ILE68) (ASN124) [view usage] : b.3.4.1 |Prealbumin-like |Transthyretin (synonym: prealbumin) |Transthyretin (synonym: prealbumin) |Transthyretin (synonym: prealbumin) |Human (Homo sapiens) [TaxId: 9606]
d1ihna_ : (HIS55) (PRO95) [view usage] : c.103.1.1 |MTH938-like |MTH938-like |MTH938-like |Hypothetical protein MT938 (MTH938) |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1mcoh4 : (PRO328) (THR379) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma |Human (Homo sapiens) [TaxId: 9606]
d3cl2a_ : (TYR100) (PRO162) [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza A virus [TaxId: 11320]
d3o0da_ : (GLY34) (GLY87) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Yarrowia lipolytica [TaxId: 4952]
d1m10b_ : (THR161) (LEU202) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |von Willebrand factor binding domain of glycoprotein Ib alpha |Human (Homo sapiens) [TaxId: 9606]
d3s7gb2 : (GLN347) (THR394) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1igtb4 : (SER363) (THR422) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma |Mouse (Mus musculus), gamma2 [TaxId: 10090]
d2w59a1 : (GLN351) (ASP398) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d3og2a3 : (ASN577) (VAL628) [view usage] : b.149.1.0 |Beta-galactosidase LacA, domain 3 |Beta-galactosidase LacA, domain 3 |automated matches |automated matches |Trichoderma reesei [TaxId: 51453]
d1caub_ : (GLY263) (GLU310) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Seed storage 7S protein |Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]
d1a57a_ : (ASN72) (GLU116) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Intestinal fatty acid binding protein |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3of6b2 : (GLU127) (ASP176) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1teya1 : (LYS3) (VAL62) [view usage] : b.1.22.1 |Immunoglobulin-like beta-sandwich |ASF1-like |ASF1-like |Anti-silencing protein 1, ASF1 |Human (Homo sapiens) [TaxId: 9606]
d1g1oa_ : (ILE68) (ASN124) [view usage] : b.3.4.1 |Prealbumin-like |Transthyretin (synonym: prealbumin) |Transthyretin (synonym: prealbumin) |Transthyretin (synonym: prealbumin) |Human (Homo sapiens) [TaxId: 9606]
d3s8ra_ : (ALA170) (GLY216) [view usage] : d.153.1.2 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin acylase, catalytic domain |Cephalosporin acylase |Pseudomonas sp., glutarylamidase [TaxId: 306]
d4imla2 : (SER136) (GLY179) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1r24a2 : (THR114) (TRP163) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin light chain kappa constant domain, CL-kappa |Mouse (Mus musculus) [TaxId: 10090]
d3o9ka_ : (TYR411) (ASP470) [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza a virus (a/duck/ukraine/1/1963(h3n8)) [TaxId: 385580]
d1ymwa_ : (SER80) (ALA122) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |Ribonuclease A (also ribonuclease B, S) |Cow (Bos taurus) [TaxId: 9913]
d2b14b_ : (ILE68) (ALA120) [view usage] : b.3.4.1 |Prealbumin-like |Transthyretin (synonym: prealbumin) |Transthyretin (synonym: prealbumin) |Transthyretin (synonym: prealbumin) |Human (Homo sapiens) [TaxId: 9606]
d4llud2 : (SER115) (THR163) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1qqha_ : (TYR169) (SER202) [view usage] : b.91.1.1 |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |Human papillomavirus type 18 [TaxId: 333761]
d4jhsa2 : (SER263) (PRO323) [view usage] : g.18.1.1 |Complement control module/SCR domain |Complement control module/SCR domain |Complement control module/SCR domain |beta2-glycoprotein I |Human (Homo sapiens) [TaxId: 9606]
d2kria_ : (ALA252) (LYS305) [view usage] : g.18.1.1 |Complement control module/SCR domain |Complement control module/SCR domain |Complement control module/SCR domain |beta2-glycoprotein I |Human (Homo sapiens) [TaxId: 9606]
d3n9gl2 : (SER122) (THR170) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3g04c_ : (THR190) (VAL233) [view usage] : c.10.2.0 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2roya_ : (ILE68) (ASN124) [view usage] : b.3.4.1 |Prealbumin-like |Transthyretin (synonym: prealbumin) |Transthyretin (synonym: prealbumin) |Transthyretin (synonym: prealbumin) |Human (Homo sapiens) [TaxId: 9606]
d2j6eb2 : (GLN342) (THR394) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2b14a_ : (ILE68) (ASN124) [view usage] : b.3.4.1 |Prealbumin-like |Transthyretin (synonym: prealbumin) |Transthyretin (synonym: prealbumin) |Transthyretin (synonym: prealbumin) |Human (Homo sapiens) [TaxId: 9606]
d1ow0a2 : (PRO347) (SER405) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha |Human (Homo sapiens) [TaxId: 9606]
d4d8sa_ : (GLY408) (ASP460) [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza A virus [TaxId: 11320]
d1t27a_ : (GLY56) (PRO118) [view usage] : d.129.3.4 |TBP-like |Bet v1-like |Phoshatidylinositol transfer protein, PITP |Phoshatidylinositol transfer protein, PITP |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2h0eb_ : (GLU64) (ARG119) [view usage] : b.3.4.0 |Prealbumin-like |Transthyretin (synonym: prealbumin) |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1f3vb1 : (VAL353) (LYS415) [view usage] : b.8.1.1 |TRAF domain-like |TRAF domain-like |MATH domain |TNF receptor associated factor 2 (TRAF2) |Human (Homo sapiens) [TaxId: 9606]
d3nssa_ : (TYR100) (PRO162) [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza A virus [TaxId: 641501]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, c.10, b.82, c.69, d.129, d.153, b.60, b.1, b.91, d.5, b.3, g.18, c.103, b.149, b.8