Tableau information
Concept source: d1j42a_ amino acid (a.a.) range (SER3)(ALA56)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER3) (LYS12) E1
(GLU15) (GLY30) H2
(LYS32) (GLY37) E3
(ASP42) (SER47) E4
(VAL50) (ALA56) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -166.0° H2
E3 -15.4° -157.9° E3
E4 69.4° -121.3° 80.8° E4
E5 -129.8° 48.3° -114.4° 142.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2pqad_ : (LEU7) (MET56) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4k2hd_ : (LYS2) (VAL51) [view usage] : c.23.16.0 |Flavodoxin-like |Class I glutamine amidotransferase-like |automated matches |automated matches |Salmonella enterica [TaxId: 99287]
d1quqb_ : (LEU7) (MET56) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Replication protein A 14 KDa (RPA14) subunit |Human (Homo sapiens) [TaxId: 9606]
d3ot1a_ : (ILE9) (GLU58) [view usage] : c.23.16.0 |Flavodoxin-like |Class I glutamine amidotransferase-like |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d2ab0a1 : (SER2) (ALA57) [view usage] : c.23.16.2 |Flavodoxin-like |Class I glutamine amidotransferase-like |DJ-1/PfpI |Protein ThiJ (YajL) |Escherichia coli [TaxId: 562]
d4e08a_ : (LYS3) (THR55) [view usage] : c.23.16.0 |Flavodoxin-like |Class I glutamine amidotransferase-like |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1j42a_ : (SER3) (ALA56) [view usage] : c.23.16.2 |Flavodoxin-like |Class I glutamine amidotransferase-like |DJ-1/PfpI |DJ-1 |Human (Homo sapiens) [TaxId: 9606]
d1sy7a1 : (ARG556) (HIS607) [view usage] : c.23.16.3 |Flavodoxin-like |Class I glutamine amidotransferase-like |Catalase, C-terminal domain |Catalase, C-terminal domain |Fungus (Neurospora crassa) [TaxId: 5141]
d3mgka_ : (SER2) (LEU56) [view usage] : c.23.16.0 |Flavodoxin-like |Class I glutamine amidotransferase-like |automated matches |automated matches |Clostridium acetobutylicum [TaxId: 1488]
d1czfa_ : (SER29) (LEU63) [view usage] : b.80.1.3 |Single-stranded right-handed beta-helix |Pectin lyase-like |Galacturonase |Polygalacturonase |Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]
d2pi2e_ : (LEU7) (MET56) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1oi4a1 : (LYS24) (THR74) [view usage] : c.23.16.2 |Flavodoxin-like |Class I glutamine amidotransferase-like |DJ-1/PfpI |Hypothetical protein YhbO |Escherichia coli [TaxId: 562]
d3mgkb_ : (SER2) (GLU53) [view usage] : c.23.16.0 |Flavodoxin-like |Class I glutamine amidotransferase-like |automated matches |automated matches |Clostridium acetobutylicum [TaxId: 1488]
d3bwee_ : (LYS804) (ALA856) [view usage] : c.23.16.2 |Flavodoxin-like |Class I glutamine amidotransferase-like |DJ-1/PfpI |DJ-1 |Human (Homo sapiens) [TaxId: 9606]
d4k2ha_ : (LYS2) (VAL51) [view usage] : c.23.16.0 |Flavodoxin-like |Class I glutamine amidotransferase-like |automated matches |automated matches |Salmonella enterica [TaxId: 99287]
d3bwed_ : (SER603) (ALA656) [view usage] : c.23.16.2 |Flavodoxin-like |Class I glutamine amidotransferase-like |DJ-1/PfpI |DJ-1 |Human (Homo sapiens) [TaxId: 9606]
d3kdfa_ : (LEU7) (LEU55) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, c.23, b.40